Align VIMSS2209746 to PF03235 (GmrSD_N)

VIMSS2209746 has 630 amino acids

Query:       GmrSD_N  [M=199]
Accession:   PF03235.19
Description: GmrSD restriction endonuclease, N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.6e-36  109.9  10.4    9.6e-36  109.9  10.4    3.3  2  VIMSS2209746  


Domain annotation for each sequence (and alignments):
>> VIMSS2209746  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.9  10.4   9.6e-36   9.6e-36       1     198 [.      12     253 ..      12     254 .. 0.78
   2 ?  -10.1  12.3         1         1      77      77 ..     429     429 ..     281     597 .. 0.62

  Alignments for each domain:
  == domain 1  score: 109.9 bits;  conditional E-value: 9.6e-36
       GmrSD_N   1 ledllskeksgfliPdyQRgyvWdeeqvedLiedike...........lrgyplGsivlwkeaededgkyeviDGQQRltTltlllka......... 77 
                   +e+ll+k+k+ +++ ++QR y+W+ +q+edL++d+ +           ++++++Gs+++     +++++++++DGQQRl Tl+++++          
  VIMSS2209746  12 VEELLKKNKQLYKVSNFQRTYAWKYKQQEDLMNDLFNhlkitdeglyeNSDFFMGSFIF----YKGSREKYIVDGQQRLITLSIVFSImrrkcieik 104
                   689****9999************************************************....55699********************999999998 PP

       GmrSD_N  78 ......................leed.....ekekeeeeklklekreedkdffekllenekeelesleklkelngkkfkdlseeekseseknlikay 147
                                         l        +  +e+   ++ ++++e+   f ++l+++++++++  +                  +s +++++ay
  VIMSS2209746 105 nnsrikfkkietheiagdiindL--YgyiytKIGSEIAPTVWPHSKNEQGYLFGEILNTDSNQKINTPE-----------------CTSCNSYYEAY 182
                   88888877777666666655541..04444477788888999999999999999999999998887333.................33333333333 PP

       GmrSD_N 148 elikek...................ai.eklklveieldseddedeafeiFerlNsrGvpLsaadllkall 198
                   + i+e+                   a+ +++k+ e+++ + dde++a+ei+ ++Ns+Gv L++ dl+k+ +
  VIMSS2209746 183 NSIEEIidsklerkrnnfekvkllkALfDQIKFAETVVLNLDDENTAYEIYSNINSKGVTLTDIDLIKNDY 253
                   3333333333333333333334443346889**************************************87 PP

  == domain 2  score: -10.1 bits;  conditional E-value: 1
       GmrSD_N  77 a 77 
                   +
  VIMSS2209746 429 Y 429
                   0 PP

Or compare VIMSS2209746 to CDD or PaperBLAST