VIMSS233474 has 540 amino acids
Query: RACo_C_ter [M=261]
Accession: PF14574.10
Description: C-terminal domain of RACo the ASKHA domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.9e-66 208.5 1.3 6.8e-65 204.8 1.3 2.1 1 VIMSS233474
Domain annotation for each sequence (and alignments):
>> VIMSS233474
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 204.8 1.3 6.8e-65 6.8e-65 2 257 .. 169 423 .. 168 427 .. 0.93
Alignments for each domain:
== domain 1 score: 204.8 bits; conditional E-value: 6.8e-65
RACo_C_ter 2 islliDiGTNaEivlgnkdwllaasaaaGPAlEGgeikcGmrAapgAierveidpetlevelkvignek......................pkGicGs 77
+l++D+GTNaE++l+ d++++asaaaGPA+EG++i++Gm A+pgAi +v+ + e +++ v+++e ++Gi+G+
VIMSS233474 169 PALVTDYGTNAEMALKVGDRIITASAAAGPAIEGQGISSGMLASPGAICDVKPEGEY--WKILVLDREMekreaylinpvsgeikesngyeVSGITGT 264
689************************************************888887..8888887655568999999999***************** PP
RACo_C_ter 78 GiidliaelleagiidkkgklnkelkserireeeeteeyvlvlaeesetekdivitekDidelirakaAiyagvktLleevglevedidkvylaGafG 175
G+i++ a +l++g+i+k kl + +++l + i itekD++e+ +a++Ai+a++ tL+ e g+++ed++ y++Ga+G
VIMSS233474 265 GVISVFALALKSGLIEKPPKL-------------PNGKLILGP--------GIEITEKDVEEAGKAIGAIRAAHMTLIVESGIRYEDLEYAYMSGASG 341
*********************.............345666644........79********************************************* PP
RACo_C_ter 176 syidlekAitiGllPdlelekvkqvGNtslagAraallsreareeleeiarki..tyielavekkFmeefvaalflphtdlelf 257
+y+d+e A ++G P ++kv+q+GNtsla A +++l++++++++ eia+ki +++++a++++F++ ++ +l+++++++ ++
VIMSS233474 342 AYVDAEAARRLGAAPG-YARKVVQFGNTSLALAWELVLDKSRLDDVIEIAKKItaDHLMMATSDTFNNFYLCELSYWTMGM-PL 423
****************.8899********************************888**********************998.45 PP
Or compare VIMSS233474 to CDD or PaperBLAST