PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS245285 to PF04167 (DUF402)

VIMSS245285 has 236 amino acids

Query:       DUF402  [M=68]
Accession:   PF04167.17
Description: Protein of unknown function (DUF402)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-21   62.5   1.4    2.9e-21   61.8   1.4    1.4  1  VIMSS245285  


Domain annotation for each sequence (and alignments):
>> VIMSS245285  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   1.4   2.9e-21   2.9e-21       4      68 .]     106     170 ..     103     170 .. 0.95

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 2.9e-21
       DUF402   4 lwllplgewynvtkfldedgrlkgwYvniatppergegtvkyiDlyLDvvvypdgevevlDedEL 68 
                  l l ++ge+++v+ f+d+ +r+k+wYvn+++p  r eg v+++D+ LD+ v+pd++++  DedE+
  VIMSS245285 106 LKLARPGEAWSVWLFWDPGWRFKNWYVNLERPLTRWEGGVDSEDHFLDISVHPDRTWHWRDEDEF 170
                  77899***************************9996788*************************9 PP



Or compare VIMSS245285 to CDD or PaperBLAST