VIMSS248905 has 542 amino acids
Query: RACo_C_ter [M=261]
Accession: PF14574.11
Description: C-terminal domain of RACo the ASKHA domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.6e-72 228.6 1.7 7.5e-71 224.3 2.3 2.5 2 VIMSS248905
Domain annotation for each sequence (and alignments):
>> VIMSS248905
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.1 0.0 0.022 0.022 149 172 .. 63 86 .. 56 88 .. 0.87
2 ! 224.3 2.3 7.5e-71 7.5e-71 1 260 [. 168 427 .. 168 428 .. 0.92
Alignments for each domain:
== domain 1 score: -0.1 bits; conditional E-value: 0.022
RACo_C_ter 149 agietLleevglevedidkvylaG 172
+++tLl+++++ e++d++ + G
VIMSS248905 63 NAVKTLLQTLDVPSEELDRISICG 86
5799*****************999 PP
== domain 2 score: 224.3 bits; conditional E-value: 7.5e-71
RACo_C_ter 1 elslliDiGTNaEivlgnkdwllaasaaaGPAlEGgeikcGmrAapgAierveidpetlevelkvignek......................pkGicG 76
e+s+ +D+GTNaE++l+ kd ++++saaaGPAlEG++ik+G++A+p Ai+++e+++ l+ + + +kGi+G
VIMSS248905 168 EISIATDYGTNAEMALKVKDIIYTGSAAAGPALEGQQIKHGTLASPFAISDFEFENGALRNYVLNEE--MkpdpgdlvdpktgeileegkikAKGITG 263
7899****************************************************99544333333..23477888888888888888888****** PP
RACo_C_ter 77 sGiidliaelleagiidkkgklnkelkserireeeeteeyvlvlaeesetekdivitekDidelirakaAiyagietLleevglevedidkvylaGaf 174
+G+i+li++++ g+++ k+ +t++ ++l++ +i+++e+D++e+ +a++Ai+ag+ tL+ ++g+e++did y+aGa
VIMSS248905 264 TGVIALIEKAIGYGLVELP-KV-------------KTPDGFIHLQN------NISFSERDLKEAGKAIGAIRAGHITLCAAAGIEMTDIDVAYMAGAA 341
****************876.55.............57899999987......8********************************************* PP
RACo_C_ter 175 GsyidiekAitiGllPdlelekvkqvGNtslagAraallsreareeleeiarki..tyielavekeFmdefvaalflphtdlelfpsv 260
G+y+d+ekA++iGl+P + k+ q+GNtsla+Ar++lls+e+++el++ia++i t+i++a+ +eF d +v +l+++++++ +f+++
VIMSS248905 342 GTYMDAEKAQKIGLIPY-STGKIAQLGNTSLAVARETLLSEERLWELQDIASQIigTHIMFATVPEFRDAYVLELAYWEEGM-PFKMF 427
*****************.9*************************************************************99.78875 PP
Or compare VIMSS248905 to CDD or PaperBLAST