Align VIMSS249405 to PF14574 (RACo_C_ter)

VIMSS249405 has 540 amino acids

Query:       RACo_C_ter  [M=261]
Accession:   PF14574.10
Description: C-terminal domain of RACo the ASKHA domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-67  212.2   3.1    5.1e-66  208.5   3.1    2.1  1  VIMSS249405  


Domain annotation for each sequence (and alignments):
>> VIMSS249405  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.5   3.1   5.1e-66   5.1e-66       2     258 ..     169     424 ..     168     427 .. 0.93

  Alignments for each domain:
  == domain 1  score: 208.5 bits;  conditional E-value: 5.1e-66
   RACo_C_ter   2 islliDiGTNaEivlgnkdwllaasaaaGPAlEGgeikcGmrAapgAierveidpetlevelkvignek......................pkGicGs 77 
                   +l++D+GTNaE++l+  d++++asaaaGPA+EG++i++Gm A+pgAi +v+ + e   +++ v++ne                       + Gi+G+
  VIMSS249405 169 PALVTDYGTNAEMALKVGDRIITASAAAGPAIEGQGISSGMLASPGAICDVKPEGEY--WKVMVLDNEMekqdaylinpvtgemketngyeAAGITGT 264
                  689************************************************988888..777777665556899************************ PP

   RACo_C_ter  78 GiidliaelleagiidkkgklnkelkserireeeeteeyvlvlaeesetekdivitekDidelirakaAiyagvktLleevglevedidkvylaGafG 175
                  G+i++ a +l++g+++k  kl              + +++l +         i itekD++e+ +a++Ai+a++ tL+ e g+++ed++  y++Ga+G
  VIMSS249405 265 GVISAFALALRSGLVEKPPKL-------------PNGKLILGP--------GIEITEKDVEEAGKAIGAIRAAHMTLIVESGIKYEDLEYAYMSGASG 341
                  *********************.............345666644........79********************************************* PP

   RACo_C_ter 176 syidlekAitiGllPdlelekvkqvGNtslagAraallsreareeleeiarki..tyielavekkFmeefvaalflphtdlelfp 258
                  +y+d+e+A ++G +P   ++k++q+GNtsla Ar+++l++++++++ +ia+ki  +++++a++++F++ ++ +l+++++++ +++
  VIMSS249405 342 AYVDAEDARRLGAVPG-YAKKIVQFGNTSLALARELVLDKSRLDDVIKIAKKItaDHLMMATSNTFNNFYLCELSYWTMGM-PLE 424
                  ****************.899*********************************888**********************998.555 PP

Or compare VIMSS249405 to CDD or PaperBLAST