PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS252623 to PF13349 (DUF4097)

VIMSS252623 has 294 amino acids

Query:       DUF4097  [M=247]
Accession:   PF13349.12
Description: Toastrack DUF4097
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-21   61.5   3.1    8.2e-20   57.3   3.1    2.7  1  VIMSS252623  


Domain annotation for each sequence (and alignments):
>> VIMSS252623  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   3.1   8.2e-20   8.2e-20      12     246 ..      45     290 ..      36     291 .. 0.77

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 8.2e-20
      DUF4097  12 dvtikqserenitveysgskkkkkdakenggtLtitgkeknatsvgms...lssgekteiivyiPkky.le................dlevklssGdi 89 
                   v+++  +r++++++ +   +++ d+ e+ ++L++++              +++g+  ++++++P++  l+                 l++k+ sG++
  VIMSS252623  45 QVRVRGWDRDEVSLTGTLGPGQRLDVNESADRLQFEVI---------YprsSRNGNGAQLELRVPRGAvLQaevvsagldvdqidlaRLQLKSVSGEV 133
                  44444444444444444444444444444444444444.........34445677888999999999975578999999999999999999******9 PP

      DUF4097  90 slsgdklelkdlalktssGdislkdvkaeelkvkstsGdvsidgseakelklettsGdieleslsgkdldakstsG..DikvsntklagslkitatsG 185
                   ++     +k+  l++ sGd++ + v++ +l++ + sG++ + ++ + ++  e+ sGdi+l++ ++ +l a+s+sG  ++kv+     gs+ ++++sG
  VIMSS252623 134 VAA---GRAKEARLESVSGDVRST-VATTRLNLSTVSGEIAAPSGASGQVSAESVSGDINLSTGQVAQLRAQSVSGttELKVAGLAPGGSIAAESVSG 227
                  999...789************976.88899**********************************************5556666666679********* PP

      DUF4097 186 didlslpesasagvdasstsGdvsipe.kleeqe.keekriygteksakkkvdvstssGDiti 246
                  +i l +p   sa+++++  sGd+++   + e  e    k+++ t ++++ ++++++ sG + +
  VIMSS252623 228 EIALGVPRTVSAALNIEVFSGDIRAVAgRVERPEyGPGKSLKTTLGAGNGDIKLESHSGSVRV 290
                  *******99****************99644433303445666677777888888888887765 PP



Or compare VIMSS252623 to CDD or PaperBLAST