PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS259703 to PF07063 (HGLS)

VIMSS259703 has 455 amino acids

Query:       HGLS  [M=386]
Accession:   PF07063.19
Description: 2-oxoadipate dioxygenase/decarboxylase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.1e-169  550.8   0.1   1.3e-169  550.5   0.1    1.1  1  VIMSS259703  


Domain annotation for each sequence (and alignments):
>> VIMSS259703  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  550.5   0.1  1.3e-169  1.3e-169       1     386 []      16     409 ..      16     409 .. 0.99

  Alignments for each domain:
  == domain 1  score: 550.5 bits;  conditional E-value: 1.3e-169
         HGLS   1 flaalsemYkeevPlygtllelvaevnaevlaadpa....leragelerltverHgAiRlGtaeelasleriFavmGmepvgyYdLsklaavpvhsTa 94 
                  f++a+s+mY++evPlyg+l++lva+vna++l+a+pa    l+r++e++rl++erHgAiR+Gta+ela+l+r+FavmGm+pvgyYdLs +a+vpvhsTa
  VIMSS259703  16 FAQAMSDMYRTEVPLYGDLMSLVAQVNAQTLQANPAlaqrLQRNDERARLDLERHGAIRVGTAAELATLRRLFAVMGMQPVGYYDLS-VAGVPVHSTA 112
                  89***********************************9999**********************************************.********** PP

         HGLS  95 FrpvdeeelaknpfRvFtSlLrvellsdealreiaeeilakrsifteellelvdkaeaqgglteedaeefvaealetfrwheeatvtleeYqeLkaes 192
                  Frp+de++l++npfRvFtSlLr+el++d+alre+a++il++r+ift  +l+l++++e+qggl++++a++fvaealetfrwh +atv+l +Y++L++++
  VIMSS259703 113 FRPIDEAALSANPFRVFTSLLRLELIEDAALREQAQQILQQRQIFTVGALQLIERYEQQGGLDADQARQFVAEALETFRWHGDATVSLPTYRALSQAH 210
                  ************************************************************************************************** PP

         HGLS 193 elaAdvvsfkgphiNHltprtldidavqaameergiklkdkiegppdrkcpilLrQtSfkAleeeveFad.dgeeeiagshtarFGEieeRgvaltpk 289
                  +l+Advvsf+gphiNHltprtldida+q++m+++gi++k++iegpp+r++pilLrQtSfkAlee+v+F + dg+ e +g+htarFGEie+Rg+altpk
  VIMSS259703 211 KLIADVVSFHGPHINHLTPRTLDIDAAQEQMQRAGIDAKAVIEGPPRRRVPILLRQTSFKALEEPVRFVGdDGQPE-HGTHTARFGEIEQRGLALTPK 307
                  **********************************************************************888887.********************* PP

         HGLS 290 GralYdellaeareeaaeae..eeyeealaeafaelpddeeelrkqgLayfryrvtekaeaka...eeasleelveeglveaepivyEdFlpvsAagI 382
                  GralYd+lla+ar++  + +  ++y+++l++af ++pdde+ lr++gL+yfry++t++++a+    +++  e+ ++ glv+a+pi+yEdFlpvsAagI
  VIMSS259703 308 GRALYDALLAQARDADGAGStgTDYATRLQTAFVAFPDDEALLRQEGLGYFRYALTDAGRADPaqvAAMPAETAIALGLVSADPIIYEDFLPVSAAGI 405
                  *************998888889************************************9999888899999*************************** PP

         HGLS 383 FeSn 386
                  F+Sn
  VIMSS259703 406 FQSN 409
                  ***9 PP



Or compare VIMSS259703 to CDD or PaperBLAST