VIMSS260588 has 608 amino acids
Query: GmrSD_N [M=199]
Accession: PF03235.19
Description: GmrSD restriction endonuclease, N-terminal domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.8e-33 102.4 4.6 1.8e-33 102.4 4.6 3.6 3 VIMSS260588
Domain annotation for each sequence (and alignments):
>> VIMSS260588
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 102.4 4.6 1.8e-33 1.8e-33 12 197 .. 17 212 .. 8 213 .. 0.87
2 ? 0.8 10.0 0.025 0.025 85 198 .. 355 456 .. 223 457 .. 0.67
3 ? -1.7 1.2 0.14 0.14 85 116 .. 534 565 .. 460 604 .. 0.56
Alignments for each domain:
== domain 1 score: 102.4 bits; conditional E-value: 1.8e-33
GmrSD_N 12 fliPdyQRgyvWdeeqvedLiedikelrgyplGsivlwkeaede.dgkyeviDGQQRltTltlllka.......leed......ekekeeeeklklek 95
+++P +QR vW+++q++++++++ + g+p+Gsi+l +e e d+ky +iDG QR +T++ ++++ d e +k ++e+ k e
VIMSS260588 17 LKLPTFQRALVWSNNQKQEFFSTL--KDGFPFGSILL---YEYEnDNKYSLIDGLQRYSTMVDFMENptnyiefE--DftlkiaELYKGASESTKAEV 107
79**********************..***********...66666**********************98864431..24455677888889999999* PP
GmrSD_N 96 reedkdffekllenekeelesleklkelngkkfkdl....seeekseseknlikayelikekai..eklklveieldseddedeafeiFerlNsrGvp 187
++ +d + k++e+ ++ +++ k +el +k +++ + + ++e + +++++++++ + +++k++ i+++ +e e e+F+rlNs+G++
VIMSS260588 108 VNYAEDILLKIIEKYIDSTKENVKVNELAKKMVDKFpvlgETDIRDEITQIQSDVITYFNNQ-LdiSNVKIPCIFFE--GEETELAEVFQRLNSGGKK 202
********************999*****9999999999998888888888888999999986.34699999999999..66779************** PP
GmrSD_N 188 Lsaadllkal 197
Ls++ ++ a+
VIMSS260588 203 LSKYQVFAAH 212
***9999876 PP
== domain 2 score: 0.8 bits; conditional E-value: 0.025
GmrSD_N 85 keeeeklklekreedkdffekllenekeelesleklkelngkkfkdlseeekseseknlikayelikekaieklklveieldseddedeafeiFerlN 182
+e++ + k+ +r + +ff++l+ +++ +++ e+++ ++ k+ k l +++++ +++++ + +++++ + + + + + +i+++ N
VIMSS260588 355 REDKYETKSFTRLQIMSFFSSLWISSYSIELD-ENKNTFSIKQTKSL-----KKNQQVILSNIIIYAI-----YDVIRKYWSG-TGDRKLMDIYISQN 440
22222223333334444444444444443333.22222333333333.....3444444444433332.....4444444444.55689********* PP
GmrSD_N 183 srGvpLsaadllkall 198
+r ++ a ++++++l
VIMSS260588 441 NRYLKPLAKEVFRNEL 456
***********99988 PP
== domain 3 score: -1.7 bits; conditional E-value: 0.14
GmrSD_N 85 keeeeklklekreedkdffekllenekeeles 116
++++ek+ ++ + dk++++ +en++ +++
VIMSS260588 534 RRKKEKFLYSAIDIDKASITGTIENQYVNNSF 565
33444444444444555555555544444333 PP
Or compare VIMSS260588 to CDD or PaperBLAST