PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS261636 to PF11753 (DUF3310)

VIMSS261636 has 85 amino acids

Query:       DUF3310  [M=59]
Accession:   PF11753.12
Description: Protein of unknwon function (DUF3310)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-27   82.0   0.1    1.7e-27   81.6   0.1    1.1  1  VIMSS261636  


Domain annotation for each sequence (and alignments):
>> VIMSS261636  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.1   1.7e-27   1.7e-27       1      59 []      18      77 ..      18      77 .. 0.96

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 1.7e-27
      DUF3310  1 vnkPkHYtkgdiEvIdviee...kltgeefkgfllgNviKYvlRakkKngleDlkKakwYld 59
                 v++P+HYt+gdiE+Id+ie+   +++++   +f++gN+iKY++Ra+ Kng+eDl+Kak+Y+d
  VIMSS261636 18 VKQPAHYTYGDIEIIDFIEQvtaQYPPQL--AFAIGNAIKYLSRAPLKNGHEDLAKAKFYVD 77
                 89******************998888877..*****************************86 PP



Or compare VIMSS261636 to CDD or PaperBLAST