VIMSS27316 has 706 amino acids
Query: DUF262 [M=199]
Accession: PF03235.18
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-43 135.3 5.8 1.6e-43 135.3 5.8 4.6 4 VIMSS27316
Domain annotation for each sequence (and alignments):
>> VIMSS27316
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 135.3 5.8 1.6e-43 1.6e-43 4 198 .. 11 216 .. 8 217 .. 0.71
2 ? 0.5 2.3 0.03 0.03 95 154 .. 222 290 .. 218 316 .. 0.59
3 ? -0.0 1.0 0.045 0.045 68 151 .. 347 436 .. 344 457 .. 0.47
4 ? -7.2 16.3 1 1 81 166 .. 557 636 .. 466 661 .. 0.63
Alignments for each domain:
== domain 1 score: 135.3 bits; conditional E-value: 1.6e-43
DUF262 4 llskkksg.fliPdyQRgyvWdeeqvedLiedike......lrgyplGsivlwkeaededgkyeviDGQQRltTltlllka............leed.. 81
++++++++ f+iP yQR y+W++eq+e+L++di + ++g+++Gsi+ + + ++ ++ + +iDGQQRltT+tll+ a
VIMSS27316 11 FFEENQNNqFVIPIYQRVYSWEKEQCEQLWDDIIKiggndkINGHFIGSILYVLDGNTPSSPLLIIDGQQRLTTITLLCIAlrshlsdevkreE--Ies 107
667777777*******************************************7666667**********************5554433333220..022 PP
DUF262 82 ...ekekeeeeklklekreedkdffekllenekeelekleklkelngkkfkdlseeekseseknlikayelikek..........ai...eklklveie 164
+++k+ +k++l +e+dkd + +l++++k + ++ +++++++l++++ ++ ekl +v+i
VIMSS27316 108 yliNSDKDGDKKFRLILSESDKDTLLSLIDKNKRKPSE----------------------PSVKIMENFKLFEKWiskntdkletIFkglEKLMIVYIA 184
23344445555555555555555555555555554444......................4444445555554445555554543113457899***** PP
DUF262 165 lddeddedeafeiFerlNsrGvpLsaadllkall 198
ld+ ++d+ + iFe++Ns+G++L+++dl+++++
VIMSS27316 185 LDK--EKDDPQLIFESMNSKGIELTQTDLIRNYI 216
**5..5669***********************97 PP
== domain 2 score: 0.5 bits; conditional E-value: 0.03
DUF262 95 kreedkdffekllenekeelekleklkelngkkfkdlseeekseseknlikayelikek.............a 154
++e++kdf++ +++ +e ++++e+l ++ ++ ++ k+ + +n++k+y ++k++
VIMSS27316 222 TEEKQKDFYNGYWRAMEEDFKQNETLFNRFVRHYLTI----KTGKIPNIKKVYGAFKDYqqkegieiedllkD 290
5667777777777777777666655555555555555....67888888888888887655555555544431 PP
== domain 3 score: -0.0 bits; conditional E-value: 0.045
DUF262 68 ltTltlllka..leed.....ekekeeeeklklekreedkdffekllenekeelekleklkelngkkfkdl.seeekseseknlikayelik 151
tT++ l ++ + + +++ ++ + + +++ dk+ + k +e+ + +l+ ++ ++ +++k + + + k +++k++++ +e ++
VIMSS27316 347 FTTISTLTESylC--RravcgLGTNSLNKIFPFFTKKIDKKQYLKSVEKHFGSLKGKQRFPNNDEFKDSFItIDFYKFKKNKYFLERLEKFD 436
5666665555220..12233333444444555555555555555555555555554333333332222222333334444444444444444 PP
== domain 4 score: -7.2 bits; conditional E-value: 1
DUF262 81 dekekeeeeklklekreedkdffekllenekeelek.leklkelngkkfkdlseeekseseknlikayelikekaieklklveield 166
+ k++++e+k k ek+e++ ++ +k+++ ++ +++ ++l + k+ k+l+e+ +++++++i ay+++k +++v i+++
VIMSS27316 557 KPKKEKKEKKEKKEKEEYKLKKEKKVYDLSSYKFSPhSRELFDILRKEIKTLDERVTENFNSKYI-AYKFFK------INFVDIVVQ 636
22233333333334444444444444444444444445555555555666665544444444443.455554......466666665 PP
Or compare VIMSS27316 to CDD or PaperBLAST