VIMSS27316 has 706 amino acids
Query: GmrSD_C [M=138]
Accession: PF07510.16
Description: GmrSD restriction endonucleases, C-terminal domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.2e-31 93.3 3.7 6.2e-31 93.3 3.7 2.2 2 VIMSS27316
Domain annotation for each sequence (and alignments):
>> VIMSS27316
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 93.3 3.7 6.2e-31 6.2e-31 2 138 .] 405 538 .. 404 538 .. 0.91
2 ? -2.9 0.5 0.32 0.32 107 113 .. 570 576 .. 555 615 .. 0.59
Alignments for each domain:
== domain 1 score: 93.3 bits; conditional E-value: 6.2e-31
GmrSD_C 2 prddefkrdltdkkfykksskklryillgrleedlyeedeikgsskketiEHilPqslaekw..gageddeeereelvndlgNLtlltgslNsaisnkd 98
p +defk+ + + +fyk +++k y+l+ rle + +++++ +++ k e iEHi+Pq+l+ kw + ge e +e++++++gNLtl+ +N ++snk+
VIMSS27316 405 PNNDEFKDSFITIDFYKFKKNK--YFLE-RLE-KFDTNEPVDTQ-KCE-IEHIMPQTLNPKWegDLGENFEAIHEKYLHTIGNLTLTG--YNAKYSNKS 495
899**************87655..****.***.66656666666.455.***********999999999999****************..********* PP
GmrSD_C 99 fleKre...kyeksclyltrkladkdkwneeviearqeaLakv 138
f+eKr+ ++++s+l+l+++l+d + ++e++ie+r+ +L+++
VIMSS27316 496 FQEKRDmekGFKQSSLKLNKNLKDLEPFGEKEIEKRASDLVDW 538
******8888999************************999875 PP
== domain 2 score: -2.9 bits; conditional E-value: 0.32
GmrSD_C 107 eksclyl 113
ek +++l
VIMSS27316 570 EKEEYKL 576
2222222 PP
Or compare VIMSS27316 to CDD or PaperBLAST