VIMSS27426 has 683 amino acids
Query: GmrSD_N [M=199]
Accession: PF03235.19
Description: GmrSD restriction endonuclease, N-terminal domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.2e-37 113.5 4.9 7.2e-37 113.5 4.9 2.3 2 VIMSS27426
Domain annotation for each sequence (and alignments):
>> VIMSS27426
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 113.5 4.9 7.2e-37 7.2e-37 9 199 .] 16 218 .. 8 218 .. 0.79
2 ? -1.8 0.7 0.15 0.15 110 110 .. 561 561 .. 440 627 .. 0.60
Alignments for each domain:
== domain 1 score: 113.5 bits; conditional E-value: 7.2e-37
GmrSD_N 9 ksgfliPdyQRgyvWdeeqvedLiedike....lrgyplGsivlw.....keaede...dgkyeviDGQQRltTltlllka.........leed....e 82
f iP yQR+y W+ee++e+L++di + ++ +++Gsi + e++ +++ +iDGQQR+tT++lllka + +
VIMSS27426 16 GTIFSIPVYQRNYTWEEENCEKLLQDIVNisqnKKTHFMGSITYIlhlidD--EKSlrqLQEFVIIDGQQRITTIMLLLKAietkiqnegI--KkeidG 110
3339****************************99*************9753..333357**********************7666555542..044456 PP
GmrSD_N 83 kekeeeeklklekreedkdffekllenekeelesleklkelngkkfkdlseeekseseknlikayelikekaieklklveieldseddedeafeiFerl 181
+ ++l+l++ ++dk+ f+ +++n++ e + + k+ +++ k+l ++ ++ ++ ++y ++ lk+v i l+ ed+ + +Fe++
VIMSS27426 111 LLNLSGQRLRLKPIKSDKEAFDLVMQNRSHEIQGVSHIKNNYKFFTKEL--DNYISKGYRIEEIYGAFLW-----LKIVAIGLE--LGEDDPQVVFESI 200
666788999********************99888555555555555555..3334445555555555554.....899999999..66779******** PP
GmrSD_N 182 NsrGvpLsaadllkalll 199
N++Gv+L+ dl++++l+
VIMSS27426 201 NATGVQLKGLDLIRNYLM 218
***************985 PP
== domain 2 score: -1.8 bits; conditional E-value: 0.15
GmrSD_N 110 e 110
VIMSS27426 561 Y 561
1 PP
Or compare VIMSS27426 to CDD or PaperBLAST