VIMSS27426 has 683 amino acids
Query: GmrSD_C [M=138]
Accession: PF07510.16
Description: GmrSD restriction endonucleases, C-terminal domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.4e-28 84.5 2.5 1.1e-27 82.8 1.2 2.4 2 VIMSS27426
Domain annotation for each sequence (and alignments):
>> VIMSS27426
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.0 0.0 0.083 0.083 3 39 .. 65 102 .. 63 110 .. 0.76
2 ! 82.8 1.2 1.1e-27 1.1e-27 2 137 .. 415 546 .. 414 547 .. 0.89
Alignments for each domain:
== domain 1 score: -1.0 bits; conditional E-value: 0.083
GmrSD_C 3 rddefkrdltdkkfykkssk.klryillgrleedlyee 39
+d++ r+l+++ +++++++ ++ll+ +e + ++e
VIMSS27426 65 DDEKSLRQLQEFVIIDGQQRiTTIMLLLKAIETKIQNE 102
7899999***********99866677887888666643 PP
== domain 2 score: 82.8 bits; conditional E-value: 1.1e-27
GmrSD_C 2 prddefkrdltdkkfykksskklryillgrleedlyeedeikgsskketiEHilPqslaekw.gageddeeereelvndlgNLtlltgslNsaisnkdf 99
p dd++k+++ +++y ++ ++++ill ++e +l++ ++ k + + ++EH++P++++++w ++ +d + +++++n++gNLtl +N+ + nk++
VIMSS27426 415 PNDDKIKAAFLVRNAYAANQ-VCKFILL-EIE-KLSNAEPPKEE--NLEVEHFYPKTPTQEWrDRVGDYFTFEQDYLNNFGNLTLSG--QNQRLGNKSY 506
89****************98.66*****.***.77744444443..455*************78889********************..********** PP
GmrSD_C 100 leKrekyek.sclyltrkla.dkdkwneeviearqeaLak 137
+ K + +e+ s+l+l+++++ ++d+w+ e+++ar+e La+
VIMSS27426 507 EAKIALMEEySSLHLNDYFTnNTDSWGIEEVRARSEYLAD 546
*****77777*******99979999************996 PP
Or compare VIMSS27426 to CDD or PaperBLAST