VIMSS274959 has 384 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.4e-59 186.5 0.0 3.3e-59 186.0 0.0 1.2 1 VIMSS274959
Domain annotation for each sequence (and alignments):
>> VIMSS274959
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 186.0 0.0 3.3e-59 3.3e-59 1 195 [. 167 371 .. 167 373 .. 0.97
Alignments for each domain:
== domain 1 score: 186.0 bits; conditional E-value: 3.3e-59
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye............lkaeaeeearaelk..lygsDl 84
RgyR +g+ap+ke++Aaa+++l++w +++pl+DP CGsGt+ IEaa++g niapg++r+f++e +++eae +a++++ + g+Dl
VIMSS274959 167 RGYRAEKGGAPIKENMAAAIIQLSNWFPDKPLIDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEawpwvdqsqvqkVRDEAESKANYDIDldISGFDL 264
9*************************************************************************************766666****** PP
UPF0020 85 drrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleeralr 182
d r+v+ ar+Nae+ag+gd i+++q+ ++L+ +++ ++vi++npPYGerl + ka++ LY+e++++++ l++ ++ +++++++ +ek ++++a +
VIMSS274959 265 DGRMVEIARKNAEEAGLGDVIKLKQMRLQDLK-TDKINGVIISNPPYGERLLDDKAVDILYNEMGQTFAP-LKT--WSKFILTSDEGFEKKYGSQADK 358
********************************.7779*********************************.999..********************** PP
UPF0020 183 kvkeknvklglll 195
k+k++n+ l+ +l
VIMSS274959 359 KRKLYNGTLKVDL 371
*******998765 PP
Or compare VIMSS274959 to CDD or PaperBLAST