PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS280496 to PF09314 (DUF1972)

VIMSS280496 has 397 amino acids

Query:       DUF1972  [M=186]
Accession:   PF09314.15
Description: Domain of unknown function (DUF1972)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   6.1e-103  328.3   4.3     1e-102  327.6   4.3    1.3  1  VIMSS280496  


Domain annotation for each sequence (and alignments):
>> VIMSS280496  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  327.6   4.3    1e-102    1e-102       1     186 []      11     196 ..      11     196 .. 0.98

  Alignments for each domain:
  == domain 1  score: 327.6 bits;  conditional E-value: 1e-102
      DUF1972   1 vkhvfiiGskGlpakyGGfetfveklveyqksk.sikyhvackseesakaehfeykgadcftikvpkiGsarviaydilalnyalklikeknikepif 97 
                  v+hvfi+GskG+p++yGG+etfv+kl+ey++++ s+kyhvack++++   ++fey++adcf++kvp+iG+a++i+yd++alny++k+ik++ni++pi+
  VIMSS280496  11 VQHVFIVGSKGIPGNYGGYETFVDKLTEYHQNNpSLKYHVACKAKDT---KTFEYHNADCFDVKVPDIGPAQAIYYDVAALNYCVKYIKQHNIQHPIV 105
                  69***************************99988**********999...79********************************************** PP

      DUF1972  98 yilantiGafiahfakkihklgGklyvnpdGlewkrakwsapvrkylkfseklmvkyadllisdnkgiekyiqdeys..avktefiayGte 186
                  yila++iG+f+ahf+++ihklgGkly+npdG+ew+rakwsapvrky+k+se+lm+k++dlli+d+k+iekyi+dey+  ++kt+fiayG+e
  VIMSS280496 106 YILACRIGPFAAHFQRVIHKLGGKLYINPDGHEWMRAKWSAPVRKYWKISEQLMTKHCDLLICDSKNIEKYIHDEYGkyNPKTTFIAYGAE 196
                  ****************************************************************************9999*********97 PP



Or compare VIMSS280496 to CDD or PaperBLAST