VIMSS281929 has 326 amino acids
Query: DUF308 [M=73]
Accession: PF03729.17
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.4e-20 58.9 38.3 2.6e-14 39.6 14.6 3.1 3 VIMSS281929
Domain annotation for each sequence (and alignments):
>> VIMSS281929
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 39.6 14.6 2.6e-14 2.6e-14 1 72 [. 161 232 .. 161 233 .. 0.97
2 ! 16.0 7.0 5.9e-07 5.9e-07 21 72 .. 243 289 .. 238 289 .. 0.84
3 ! 22.4 8.2 6.2e-09 6.2e-09 3 49 .. 278 324 .. 276 326 .] 0.93
Alignments for each domain:
== domain 1 score: 39.6 bits; conditional E-value: 2.6e-14
DUF308 1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllll 72
++G+++i+lG+++l+ P +l++ ++l+Gv++++sG+v++v+a+ + gg ++l++++Gil +G++++
VIMSS281929 161 VVGVAAIALGAALLLVPNKTLALAALLLGVYFVISGVVRIVSALVEPGLPGGWRVLDVFVGILLTFGGVVVV 232
68**************************************************999**************986 PP
== domain 2 score: 16.0 bits; conditional E-value: 5.9e-07
DUF308 21 llalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllll 72
+l++++++G+ +++ G+++lv ++ r ++g + ++ +i++iiaG+++l
VIMSS281929 243 ALLITLMVGFGWIMEGVLSLVESW--RI-PHSG--WAIAYAIISIIAGFVVL 289
67899****************888..33.3333..799***********986 PP
== domain 3 score: 22.4 bits; conditional E-value: 6.2e-09
DUF308 3 GilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkk 49
+i++ii+G+++l+ P+ ++++++i+ G ++v Gi++++ af++ k+
VIMSS281929 278 AIISIIAGFVVLMSPLSSAVFMIIFGGCAMVVMGITSVIRAFTFGKR 324
89****************************************87765 PP
Or compare VIMSS281929 to CDD or PaperBLAST