PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS288690 to PF10928 (DUF2810)

VIMSS288690 has 120 amino acids

Query:       DUF2810  [M=53]
Accession:   PF10928.12
Description: Protein of unknown function (DUF2810)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-36  110.8   3.0    1.4e-36  110.7   1.9    1.6  2  VIMSS288690  


Domain annotation for each sequence (and alignments):
>> VIMSS288690  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.59      0.59      14      19 ..      21      26 ..      18      28 .. 0.78
   2 !  110.7   1.9   1.4e-36   1.4e-36       1      51 [.      66     116 ..      66     118 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.59
      DUF2810 14 aEqADm 19
                 + qAD+
  VIMSS288690 21 HQQADL 26
                 679998 PP

  == domain 2  score: 110.7 bits;  conditional E-value: 1.4e-36
      DUF2810   1 dvkslpFkRaltKaEqADmGkLKKsvrGLvvvHPmtalGrelglkevtGyA 51 
                  ++ ++pF+Ra+tK+EqADmGkLKKsvrGLvvvHPmtalGre+gl+e+tG+ 
  VIMSS288690  66 KLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTALGREMGLEEMTGFS 116
                  5789*********************************************96 PP



Or compare VIMSS288690 to CDD or PaperBLAST