VIMSS305500 has 217 amino acids
Query: DUF3828 [M=125]
Accession: PF12883.11
Description: Protein of unknown function (DUF3828)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.9e-26 78.4 5.0 3.6e-20 58.7 0.2 3.2 3 VIMSS305500
Domain annotation for each sequence (and alignments):
>> VIMSS305500
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 58.7 0.2 3.6e-20 3.6e-20 73 123 .. 2 52 .. 1 54 [. 0.96
2 ! 4.2 0.1 0.0027 0.0027 4 35 .. 107 134 .. 104 139 .. 0.86
3 ! 16.7 0.1 3.6e-07 3.6e-07 73 119 .. 150 194 .. 138 199 .. 0.87
Alignments for each domain:
== domain 1 score: 58.7 bits; conditional E-value: 3.6e-20
DUF3828 73 iasvavgkadadlggekVdvtLgkqdgekiqatvklkrEggkWkIddvrsl 123
++sva++++dad++++ V+++++++d+ek+ +t+k+++E+g+W+Idd++s+
VIMSS305500 2 LESVAITQTDADHADAIVRFRIFQDDKEKTSQTLKMVAENGRWVIDDIVSN 52
799*********************************************987 PP
== domain 2 score: 4.2 bits; conditional E-value: 0.0027
DUF3828 4 qavrqfydsyvltftedertpkdkatgmreyi 35
qav++fy+ +t+++ p+++++ +r++i
VIMSS305500 107 QAVNAFYKTTFKTANN----PDEDMPIERQFI 134
89*************9....888888888876 PP
== domain 3 score: 16.7 bits; conditional E-value: 3.6e-07
DUF3828 73 iasvavgkadadlggekVdvtLgkqdgekiqatvklkrEggkWkIdd 119
+++++v + d + + V++tL ++g++ ++++ l+r +gkW I+d
VIMSS305500 150 VDEIRVLEKTTDSARIHVRFTL--TNGNNEEQELILQRREGKWEIAD 194
788999999999**********..888888999************98 PP
Or compare VIMSS305500 to CDD or PaperBLAST