PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS305723 to PF04074 (DUF386)

VIMSS305723 has 154 amino acids

Query:       DUF386  [M=145]
Accession:   PF04074.16
Description: YhcH/YjgK/YiaL
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-44  137.7   0.0    1.7e-44  137.6   0.0    1.0  1  VIMSS305723  


Domain annotation for each sequence (and alignments):
>> VIMSS305723  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.6   0.0   1.7e-44   1.7e-44       1     145 []       1     149 [.       1     149 [. 0.95

  Alignments for each domain:
  == domain 1  score: 137.6 bits;  conditional E-value: 1.7e-44
       DUF386   1 MIidnlenlery.lkpklkkaieflketdlealeeGkyeidgddlfanvqeyetkpkeeaklEvHrkyiDiqivlegeEtigyaelaekeelkeeyde 97 
                  M+++++++l +  l+p+l++a++   + + ++ ++G+ye++gd++f+nv++++t+++ e+k+E+H++yiDiq++l+geE+i +  +  + ++ ee+++
  VIMSS305723   1 MMMGEVQSLPSAgLHPALQDALTLALAARPQEKAPGRYELQGDNIFMNVMTFNTQSPVEKKAELHEQYIDIQLLLNGEERILFGMAG-TARQCEEFHH 97 
                  8999999999999********************************************************************888666.555556899* PP

       DUF386  98 ekDiafyeedeeessvtlkpgefaiffPedaHrp....egkekvrKvVvKvk 145
                  e+D++++++ e+e+ + lkpg+fa+f+P+++H+p    +++ +++KvVvK+k
  VIMSS305723  98 EDDYQLCSAIENEQAIILKPGMFAVFMPGEPHKPgcvvGEPGEIKKVVVKIK 149
                  **************************************9999********97 PP



Or compare VIMSS305723 to CDD or PaperBLAST