PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS306509 to PF11392 (DUF2877)

VIMSS306509 has 286 amino acids

Query:       DUF2877  [M=109]
Accession:   PF11392.12
Description: Protein of unknown function (DUF2877)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-31   95.7   0.0      2e-31   95.2   0.0    1.3  1  VIMSS306509  


Domain annotation for each sequence (and alignments):
>> VIMSS306509  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   0.0     2e-31     2e-31       1     108 [.     168     278 ..     168     279 .. 0.90

  Alignments for each domain:
  == domain 1  score: 95.2 bits;  conditional E-value: 2e-31
      DUF2877   1 lvGlGpGlTPsgDDflvGllaalallgakaakseaelleeva..aaekkttdvSaalLraAlegevsesllallkalssedeeel.akaieellaiGh 95 
                  l+G+G+GlTP gDD+l G+laal+l + +a  ++ + + + a  + +++ttd+S+++L+ Al+g +se++ +ll++l ++++  + a+++e+++++G 
  VIMSS306509 168 LIGFGKGLTPDGDDYLLGYLAALWLWQLPAPLADHQYRLQQAidQHAHNTTDISRHYLERALQGHFSEPICQLLAQLVGSASAMTiASCAEQVMQFGA 265
                  79**********************999888766665554444459********************************9988887779*********** PP

      DUF2877  96 tSGadlllGlllg 108
                  tSG+d+l+G+l g
  VIMSS306509 266 TSGVDCLAGMLHG 278
                  **********976 PP



Or compare VIMSS306509 to CDD or PaperBLAST