PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS306710 to PF02965 (Met_synt_B12)

VIMSS306710 has 1227 amino acids

Query:       Met_synt_B12  [M=273]
Accession:   PF02965.21
Description: Vitamin B12 dependent methionine synthase, activation domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.3e-135  435.9   0.1   5.9e-135  435.0   0.1    1.4  1  VIMSS306710  


Domain annotation for each sequence (and alignments):
>> VIMSS306710  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  435.0   0.1  5.9e-135  5.9e-135       2     273 .]     938    1208 ..     937    1208 .. 0.99

  Alignments for each domain:
  == domain 1  score: 435.0 bits;  conditional E-value: 5.9e-135
  Met_synt_B12    2 leelveyidWtpffqaWelkgkypkiledekvgeeakklfkdAqamLkkiieekllkakavvglfpAnsegddievyadesrseelatlhtLrqq 96  
                    +e+l++yidWtpff++W+l+gkyp+ilede+vg ea++lfkdA++mL+k+ +ek+l+ ++vvglfpAn++gddie+y+de+r++++++ h+Lrqq
   VIMSS306710  938 IETLRNYIDWTPFFMTWSLAGKYPRILEDEVVGVEAQRLFKDANDMLDKLSAEKMLNPRGVVGLFPANRVGDDIEIYRDETRTHVINVSHHLRQQ 1032
                    899******************************************************************************************** PP

  Met_synt_B12   97 aekeegkpnlclaDfvapkesgvkDyiGlFavtaglgieelakefeaekddYsailvkaladrLaeAfaellhekvrkelWgyakdeklsneeli 191 
                    +ek +g +n+claDfvapk sg++DyiG+Favt gl+ ++la++fea++ddY++i+vkaladrLaeAfae+lhe+vrk +Wgya++e+lsneeli
   VIMSS306710 1033 TEK-TGFANYCLADFVAPKVSGKADYIGAFAVTGGLEEDALADAFEAQHDDYNKIMVKALADRLAEAFAEYLHERVRKVYWGYAPNENLSNEELI 1126
                    998.699**************************************************************************************** PP

  Met_synt_B12  192 kekYqgiRpApGYpacpdhtekktlfelldaeekigieLteslamtPaasvsGlyfahpearyFavgkiekdqvedyakrkg 273 
                    +e+YqgiRpApGYpacp+htek+t++ell++e+++g++Ltes+am+P asvsG+yf+hp+++y+av++i++dqvedya+rkg
   VIMSS306710 1127 RENYQGIRPAPGYPACPEHTEKATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQRDQVEDYARRKG 1208
                    ********************************************************************************97 PP



Or compare VIMSS306710 to CDD or PaperBLAST