VIMSS307152 has 507 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.4e-13 37.1 0.0 3.1e-13 36.0 0.0 1.5 1 VIMSS307152
Domain annotation for each sequence (and alignments):
>> VIMSS307152
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.0 0.0 3.1e-13 3.1e-13 18 171 .. 190 342 .. 186 363 .. 0.72
Alignments for each domain:
== domain 1 score: 36.0 bits; conditional E-value: 3.1e-13
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqada..a 113
+ +v + + k ge+++DP CG+G++l a ++n + + + ++ ++++ g+++++ a +N g++ ++++ + +
VIMSS307152 190 RFMVDRVDPKLGESIMDPACGTGGFLACAFDHVKNKY-----------VKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEVPVQIRHDNTlnK 276
67999*********************76666666666...........2344445556777*******998889999999999888888887665115 PP
UPF0020 114 kLrlkegevdvivtnpPYGerlgs........kkalekLYseflrelkrvlrgggrlvlltaenka 171
L +++ dvivtnpP+G ++ + + ++ + fl+ + +vl+++gr+++++++
VIMSS307152 277 PLSSWDEQLDVIVTNPPFGGTEEDgieknfpaEMQTRETADLFLQLIVEVLAKNGRAAVVLPDGTL 342
56677779***********65333111111113344555666777888888888888887776655 PP
Or compare VIMSS307152 to CDD or PaperBLAST