PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS3236183 to PF11753 (DUF3310)

VIMSS3236183 has 156 amino acids

Query:       DUF3310  [M=59]
Accession:   PF11753.12
Description: Protein of unknwon function (DUF3310)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      8e-26   76.2   0.1    1.1e-25   75.8   0.1    1.2  1  VIMSS3236183  


Domain annotation for each sequence (and alignments):
>> VIMSS3236183  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.1   1.1e-25   1.1e-25       1      58 [.      80     142 ..      80     143 .. 0.96

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 1.1e-25
       DUF3310   1 vnkPkHY.tkgdiEvIdvieekltgeefkgfllgNviKYvlRakkKng....leDlkKakwYl 58 
                   v++P+HY  ++++E+I+vi++++t+e+f+g++lgN++KY+lRa+kK++    ++DlkKa++Y 
  VIMSS3236183  80 VTHPNHYmLFDNVEAIEVIARSMTVEAFRGYCLGNILKYRLRAGKKSElatmEKDLKKAAFYQ 142
                   89*********************************************998899********95 PP



Or compare VIMSS3236183 to CDD or PaperBLAST