VIMSS3243279 has 317 amino acids
Query: SU10_MCP [M=292]
Accession: PF17236.8
Description: SU10 major capsid protein
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-96 309.7 3.5 1.4e-96 309.4 3.5 1.0 1 VIMSS3243279
Domain annotation for each sequence (and alignments):
>> VIMSS3243279
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 309.4 3.5 1.4e-96 1.4e-96 6 291 .. 12 313 .. 3 314 .. 0.93
Alignments for each domain:
== domain 1 score: 309.4 bits; conditional E-value: 1.4e-96
SU10_MCP 6 gttfntedlsdeisnispedtPllsligkgtkatstkheWqedelaapaadnaavEgadaptaeatprvrlsNytQIfkktvevSgtaqavkkagvg 102
+ ++++edl d+i+ni p+dtP++s+igk + at+ +heWq+del++p++ n++vEg+da+ ++ + ++ l+Ny+QI+++t +v+gta+ vkkag++
VIMSS3243279 12 EINGKREDLIDIIYNIAPYDTPFMSAIGK-GVATAITHEWQTDELRQPGK-NTRVEGEDATIKAGSFTTMLNNYCQISDETLQVTGTADRVKKAGRK 106
334555***********************.67***************999.********************************************** PP
SU10_MCP 103 delayqvakklkelkrdiEkalingtka..dgssatarktgGllafittnvs.............taatdgtagaltedllndllqkvyeaGgnpkt 184
+elayq+akk+kelk+d+E+al++ +a + +++t+++++ ++a+ +tn+s +++t+g+ + lted+l ++ ++++ +Gg+++
VIMSS3243279 107 NELAYQLAKKSKELKLDMEYALVGAPQAkvQRNTTTPGQMANIFAYYKTNGSlgangvapvgdgsNTGTAGDLRLLTEDMLLNASESIWRNGGQANS 203
*************************9998766778***************************999999999999*********************** PP
SU10_MCP 185 llvgakqkraiskfa.gdaertrnvg..ktlgvsvdvyetdfGtlnvvlnrvmpadtilvldpeylklaflrpffaeplaktGdaekgqivgEytLe 278
+ +++++k+aisk + g+a+ + + +++ ++vdvye+dfG++++ nr++ ++t++v+dp++ +l +lrpff+ +laktGd+ek+q++ Eyt +
VIMSS3243279 204 IQTSSSIKKAISKNMkGRATEITLDAsdNRIAQTVDVYESDFGKYTIRANRWFHENTLFVFDPKMHSLCYLRPFFQHELAKTGDSEKRQLLVEYTFR 300
************6662555555555579********************************************************************* PP
SU10_MCP 279 vrnekahgvitgl 291
v+nek ++i+++
VIMSS3243279 301 VNNEKSGALIRDV 313
*********9986 PP
Or compare VIMSS3243279 to CDD or PaperBLAST