VIMSS335309 has 762 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.3e-51 159.2 0.0 1.9e-46 144.4 0.0 2.3 2 VIMSS335309
Domain annotation for each sequence (and alignments):
>> VIMSS335309
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 144.4 0.0 1.9e-46 1.9e-46 1 194 [. 177 392 .. 177 394 .. 0.91
2 ! 12.5 0.0 4.8e-06 4.8e-06 75 130 .. 622 678 .. 588 687 .. 0.80
Alignments for each domain:
== domain 1 score: 144.4 bits; conditional E-value: 1.9e-46
UPF0020 1 RgyRvfngpapLketLAaalvrlagw....kdgepllDPmCGsGtilIEaallganiapgllrefvye.............lkaeaeeear....ael 77
RgyR +g apLke+LAaa++ +agw +g l+DPmCG Gt+l+Ea++++a+iap re++++ l++ea ++a+ ++
VIMSS335309 177 RGYRLQQGAAPLKENLAAAILIRAGWpriaAEGGALADPMCGVGTFLVEAGMIAADIAPNIKRERWGFsawlghvptlwrkLHDEALARAEaglaKTP 274
9*************************5554579**********************************************9955555555554441554 PP
UPF0020 78 k.lygsDldrrvvqgareNaekagvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkal 172
+ ++g + d+r++q +r+N e+ag++d i+++q ++a ++ ++++ +++++npPYGerlg++ +l LY++++++l + + + + ++++++ +l
VIMSS335309 275 SwIRGYEADPRLIQPGRNNIERAGLSDWIKVYQGEVATFEprPDQNQKGLVICNPPYGERLGDEASLLYLYQNLGERLRQACLN--WEAAVFTGAPDL 370
49*************************************996555699************************************..************ PP
UPF0020 173 ekaleeralrkvkeknvklgll 194
k ++ r+ +++ n+ l +
VIMSS335309 371 GKRMGIRSHKQYSFWNGALPCK 392
************9999999886 PP
== domain 2 score: 12.5 bits; conditional E-value: 4.8e-06
UPF0020 75 aelklygsDldrrvvqgareNaekagvgdliefsqadaak.LrlkegevdvivtnpP 130
+ +Dl r +++ ar+N++ g +d+ ++q d+ + L+++++e+d+i +pP
VIMSS335309 622 GARSTTSVDLSRTYLDWARRNLSLNGFSDKNRLEQGDVMAwLQANRDEYDLIFIDPP 678
44457899*****************************9763778888*********9 PP
Or compare VIMSS335309 to CDD or PaperBLAST