PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS335528 to PF13503 (DUF4123)

VIMSS335528 has 155 amino acids

Query:       DUF4123  [M=119]
Accession:   PF13503.11
Description: Domain of unknown function (DUF4123)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.5e-31   93.3   0.8    8.7e-31   92.9   0.8    1.2  1  VIMSS335528  


Domain annotation for each sequence (and alignments):
>> VIMSS335528  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.8   8.7e-31   8.7e-31       2     119 .]       6     126 ..       5     126 .. 0.94

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 8.7e-31
      DUF4123   2 YallDgaldpellellealsgeaase.LyagtpeeelaevgPwLveledasallr...eeegwgpslgwllaSalplealaahlrsllqvrlpdgeev 95 
                  Y+l+Dg+l p+++++l++l+++ + + Ly gt+++++ ++gP+Lv+l+++sal+r    +++++ ++ + ++S+++l+++aahlr++l+ +   g++ 
  VIMSS335528   6 YLLIDGMLRPDAIKQLYQLNEPLDIApLYLGTRWSKIVDMGPVLVQLPSQSALVRewhGNAAQRIDACI-FHSSASLKVVAAHLRQYLNPDDYLGNSS 102
                  9*************************************************9999988666666667777.**************************** PP

      DUF4123  96 llRfydprvlrallqtldeeqrsa 119
                  llRf+dp vl+++l++ + e++s+
  VIMSS335528 103 LLRFADPLVLHHWLSSYSREHLSQ 126
                  ********************9986 PP



Or compare VIMSS335528 to CDD or PaperBLAST