PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS3382792 to PF07351 (DUF1480)

VIMSS3382792 has 79 amino acids

Query:       DUF1480  [M=78]
Accession:   PF07351.18
Description: Protein of unknown function (DUF1480)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-53  164.7   0.1    2.2e-53  164.6   0.1    1.0  1  VIMSS3382792  


Domain annotation for each sequence (and alignments):
>> VIMSS3382792  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.6   0.1   2.2e-53   2.2e-53       1      78 []       1      78 [.       1      78 [. 0.99

  Alignments for each domain:
  == domain 1  score: 164.6 bits;  conditional E-value: 2.2e-53
       DUF1480  1 msktklrisafeiddavlsseqkgertlsiPcksdpdlcmqldawdeetsiPailngkdsllyrkhydrqkdawvmrv 78
                  mskt++ri+afeidda+l++e++gertlsiPcksdpdlcmqldawd++ts+Pailng++s+lyrkhydrq+dawvmr+
  VIMSS3382792  1 MSKTNVRIGAFEIDDAELHGEHQGERTLSIPCKSDPDLCMQLDAWDADTSVPAILNGEHSVLYRKHYDRQSDAWVMRL 78
                  99**************************************************************************97 PP



Or compare VIMSS3382792 to CDD or PaperBLAST