PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS338343 to PF13503 (DUF4123)

VIMSS338343 has 227 amino acids

Query:       DUF4123  [M=119]
Accession:   PF13503.11
Description: Domain of unknown function (DUF4123)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-34  103.1   0.2      1e-33  102.3   0.2    1.4  1  VIMSS338343  


Domain annotation for each sequence (and alignments):
>> VIMSS338343  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.2     1e-33     1e-33       1     115 [.       5     121 ..       5     124 .. 0.96

  Alignments for each domain:
  == domain 1  score: 102.3 bits;  conditional E-value: 1e-33
      DUF4123   1 lYallDgaldpellellealsgeaase.LyagtpeeelaevgPwLveledasallr.eeegwgpslgwllaSalplealaahlrsllqvrlpdgeevl 96 
                  lY+++ +a+d e+l++l++++++++ + ++ gtp+++++ v+P+L el++ sa+l+  +e  ++++gwl +S++p +++ +hlrsl+qv++pdg ev+
  VIMSS338343   5 LYLVVSAASDAEALKTLYQVEPSTQVTpIWGGTPYDTWQPVMPYLSELMPRSAFLNwVAETDAEDWGWLAVSTHPSQVVFEHLRSLTQVKMPDGAEVF 102
                  7**************************************************888888999999*********************************** PP

      DUF4123  97 lRfydprvlrallqtldee 115
                  +Rf+d r+++++l+ l e+
  VIMSS338343 103 FRFWDGRHIYPILEGLGEA 121
                  *************998775 PP



Or compare VIMSS338343 to CDD or PaperBLAST