PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS343272 to PF02698 (DUF218)

VIMSS343272 has 365 amino acids

Query:       DUF218  [M=132]
Accession:   PF02698.21
Description: DUF218 domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-23   68.3   0.0    8.6e-23   66.9   0.0    1.7  2  VIMSS343272  


Domain annotation for each sequence (and alignments):
>> VIMSS343272  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.18      0.18      17     100 ..     110     117 ..      74     153 .. 0.66
   2 !   66.9   0.0   8.6e-23   8.6e-23       2     104 ..     194     310 ..     193     352 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.18
       DUF218  17 ldeaaelyregkiivsGgggdeevseaeamarylleelgvperilledksrnTyenarfskellgkrvllVTsafHmpRalllf 100
                  +d                                                                            Ra  lf
  VIMSS343272 110 VD----------------------------------------------------------------------------RAIELF 117
                  33............................................................................333333 PP

  == domain 2  score: 66.9 bits;  conditional E-value: 8.6e-23
       DUF218   2 aivVLGaal.......evlaaRldeaaelyregk...iivsGgggdeevseaeamarylleelgvpe.rilledksrnTyenarfskell....gkrv 84 
                  aiv LG al       ++l +Rl+++++++++++   ii++Gg ++++ +e ++ma++l+  +gv + ri+ e+ +++T  na+fs+  l     k++
  VIMSS343272 194 AIVTLGYALnpdgsmhQILVERLETTLAMAKANPdaiIILTGGVPKNHKTEGKLMADWLIG-KGVSKdRIIEENYATSTVGNALFSSYALarhnIKHA 290
                  8999**666666667889999************4456******666799***********6.****66*******************9999*97448* PP

       DUF218  85 llVTsafHmpRalllfrkag 104
                  ++++sa+H++R   lf+ a 
  VIMSS343272 291 TIISSASHVRRGQTLFEIAS 310
                  ****************9884 PP



Or compare VIMSS343272 to CDD or PaperBLAST