VIMSS34373 has 133 amino acids
Query: DUF350 [M=54]
Accession: PF03994.18
Description: Domain of Unknown Function (DUF350)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.1e-27 81.3 24.0 1e-16 47.1 6.3 2.3 3 VIMSS34373
Domain annotation for each sequence (and alignments):
>> VIMSS34373
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 47.1 6.3 1e-16 1e-16 1 54 [] 7 61 .. 7 61 .. 0.99
2 ? -3.2 0.1 0.52 0.52 43 46 .. 72 75 .. 65 77 .. 0.48
3 ! 43.2 6.6 1.6e-15 1.6e-15 1 54 [] 78 132 .. 78 132 .. 0.99
Alignments for each domain:
== domain 1 score: 47.1 bits; conditional E-value: 1e-16
DUF350 1 YgvvGivllllgflvvdlltpgklreeIkegnn.AaaivlagasiavgliiaaaI 54
Y++vG ++l++gfl+v lltpg+lr+++ +++ +a+++ a +++a++++ aaI
VIMSS34373 7 YFLVGAAVLVAGFLMVNLLTPGDLRRLVFIDRRpNAVVLAATMYVALAIVTIAAI 61
9*****************************************************9 PP
== domain 2 score: -3.2 bits; conditional E-value: 0.52
DUF350 43 siav 46
+i+v
VIMSS34373 72 LIGV 75
3333 PP
== domain 3 score: 43.2 bits; conditional E-value: 1.6e-15
DUF350 1 YgvvGivllllgflvvdlltpgklreeIkegnn.AaaivlagasiavgliiaaaI 54
Yg+vG++l+ ++++++++++pg++re+I + + +a++++a++++av+ +iaaa+
VIMSS34373 78 YGIVGVALQGVALVILEIAVPGRFREHIDAPALhPAVFATAVMLLAVAGVIAAAL 132
9****************************************************97 PP
Or compare VIMSS34373 to CDD or PaperBLAST