VIMSS346335 has 319 amino acids
Query: LpxR [M=322]
Accession: PF09982.13
Description: Outer membrane protein LpxR
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.9e-42 130.8 1.5 5.5e-42 129.9 1.5 1.4 1 VIMSS346335
Domain annotation for each sequence (and alignments):
>> VIMSS346335
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 129.9 1.5 5.5e-42 5.5e-42 14 319 .. 23 318 .. 9 319 .] 0.83
Alignments for each domain:
== domain 1 score: 129.9 bits; conditional E-value: 5.5e-42
LpxR 14 Aqe......keekstlslqleNDlfagegsDr.yYTnGlrlswlsaeeekkwlrelarllkplsksaesekrlglslgQkiyTPsdieaedpdp..dD 102
A++ ++++++++ N l+++++ Dr +YT+Gl+l + ++ +++ ++l++ ++Q iy Ps ++++p++ D
VIMSS346335 23 ASSlaisvaNDDAGIFQPS-LNALYGHKAADRgDYTAGLFLGYSHDLTDA--------------------SQLSFHIAQDIYSPSGANKRKPEAvkGD 99
3334444433445555443.488888887787469999999997766555....................3699**********8877777765559* PP
LpxR 103 rPYAGylylelglqsetkde.ldslelslGvvGpaslaeqvQklvHkligseepkGWdnQlknepavnlsyerekrllekeadsgleldliphagaal 199
r + ++l+++l +s ++ + +l+ ++Gv+Gp++++++vQ+ H++ig e+ W+ Q++n ++ ++++ + l+ + g+++ + p+++a
VIMSS346335 100 RAFSAFLHTGLEWNSLATNWlRYRLGTDIGVIGPDAGGQEVQNRAHRIIGAEKYPAWQDQIENRYG--YTAKGMVSLTPAIDILGVNVGFYPEVSAVG 195
********************889*****************************************98..577888888889999*************** PP
LpxR 200 GnvkteasagltlRlGknLpkdfgsa....rirpgseafap......skskfgwyvFagaegryvarditLdGntfr.dspsvdkeplvadlelGval 286
Gn++++++ g+t+ lG+ +k f+s+ + + +k++ + vFag+e r v +++tL+G+t + + ++vd+++ v ++++G+ +
VIMSS346335 196 GNLFQYLGYGATVALGN--DKTFNSDngfgLL-------SRrglihtQKEGLIYKVFAGVERREVDKNYTLQGKTLQtKMETVDINKTVDEYRVGATI 284
****************9..9999998433222.......2223334489****************************7777***************** PP
LpxR 287 aykrvrlsytlvfrtkefeeqeead.qfGslsls 319
y+ v +s++l+ t+ef++ ++ + G ++++
VIMSS346335 285 GYSPVAFSLSLNKVTSEFRTGDDYSyINGDITFF 318
*******************996655577777765 PP
Or compare VIMSS346335 to CDD or PaperBLAST