VIMSS352014 has 1016 amino acids
Query: DUF4988 [M=182]
Accession: PF16378.9
Description: Domain of unknown function
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.3e-14 40.3 1.4 1.3e-14 40.3 1.4 2.6 3 VIMSS352014
Domain annotation for each sequence (and alignments):
>> VIMSS352014
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.3 1.4 1.3e-14 1.3e-14 8 125 .. 27 142 .. 24 152 .. 0.79
2 ? -1.8 0.1 0.11 0.11 134 160 .. 496 525 .. 482 548 .. 0.57
3 ? -2.8 0.1 0.22 0.22 42 72 .. 666 696 .. 648 713 .. 0.63
Alignments for each domain:
== domain 1 score: 40.3 bits; conditional E-value: 1.3e-14
DUF4988 8 lkervealesqvkelndnitalkalveegkviteveeaadgsyvltlsdgktitlkqgkdgekaaPvigvrdeeGlyyWtvttdGettelkdaegkki 105
++ ++ le+++ e + i +++l+e+g vit+ve+ + g ++tls+gk t+k+g+ +k+ ++ e+G yW + dG++te k + g k
VIMSS352014 27 YDDDIDRLEQKITENANAIAEINKLIEGGSVITKVENITGG-VEVTLSNGKSFTIKNGDA-GKDGTQWTI-GEDG--YWYQ--DGKKTEFKAK-GDKG 116
58999********************************7766.******************.889999999.99**..****..9999888743.4443 PP
DUF4988 106 kav........gkdgitPvlsvdeegyW 125
++ gkdg t + + +g+W
VIMSS352014 117 EPGtpgepgtpGKDGDTYIPGE--DGFW 142
3322335544455555544433..3777 PP
== domain 2 score: -1.8 bits; conditional E-value: 0.11
DUF4988 134 sverildedGkpvkAvdkds...aedsffk 160
+ +r l+ dG++++ dk+s ++ +k
VIMSS352014 496 QTKRYLKLDGSKISVIDKQSasiGRQAVLK 525
455666677888877777774432333333 PP
== domain 3 score: -2.8 bits; conditional E-value: 0.22
DUF4988 42 veeaadgsyvltlsdgktitlkqgkdgekaa 72
++ g+yv+++ + t t + k +++a
VIMSS352014 666 KNQLRAGTYVIKFTYSTTNTAPTYKAFTITA 696
3445678999999999888877777755544 PP
Or compare VIMSS352014 to CDD or PaperBLAST