VIMSS354328 has 175 amino acids
Query: DUF308 [M=73]
Accession: PF03729.18
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.3e-28 83.7 34.9 3.5e-15 42.4 17.1 3.1 3 VIMSS354328
Domain annotation for each sequence (and alignments):
>> VIMSS354328
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.4 2.6 3.9e-11 3.9e-11 1 44 [. 15 58 .. 6 72 .. 0.90
2 ! 42.4 17.1 3.5e-15 3.5e-15 1 73 [] 73 145 .. 73 145 .. 0.98
3 ! 32.3 7.2 4.9e-12 4.9e-12 4 44 .. 134 174 .. 134 175 .] 0.97
Alignments for each domain:
== domain 1 score: 29.4 bits; conditional E-value: 3.9e-11
DUF308 1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaaf 44
+lGil+++ +++ + +P l+a+v+++++++++ Gi++++
VIMSS354328 15 VLGILFVLTALISFQNPAGNLIAIVMVFAIFAIIKGIFEIFVRN 58
69**************************************7544 PP
== domain 2 score: 42.4 bits; conditional E-value: 3.5e-15
DUF308 1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilsiiaGllllf 73
+lGi+ i++G+++l++ + +++l +++++++l+++i++l++ +a++ + g+fw+ l++ +l ii+G++llf
VIMSS354328 73 ILGIIDILIGVYLLFNLNIGVAVLPFVFAIWFLFDSIFGLFTLDFAKRVSTGYFWFTLIVDVLGIILGVMLLF 145
79***************************************9999**************************98 PP
== domain 3 score: 32.3 bits; conditional E-value: 4.9e-12
DUF308 4 illiilGilaliwPgaallalviliGvlllvsGivqlvaaf 44
+l iilG+++l++P+ ++l+l++l+G++++++Gi ++v af
VIMSS354328 134 VLGIILGVMLLFNPLSSALTLSFLVGFYFMMFGISNIVYAF 174
799************************************99 PP
Or compare VIMSS354328 to CDD or PaperBLAST