VIMSS3555401 has 561 amino acids
Query: ABC_transp_aux [M=288]
Accession: PF09822.16
Description: ABC-type uncharacterized transport system
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.3e-101 324.0 2.5 4.3e-101 324.0 2.5 1.6 2 VIMSS3555401
Domain annotation for each sequence (and alignments):
>> VIMSS3555401
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.2 0.0 0.11 0.11 126 163 .. 121 158 .. 74 174 .. 0.67
2 ! 324.0 2.5 4.3e-101 4.3e-101 1 288 [] 190 497 .. 190 497 .. 0.97
Alignments for each domain:
== domain 1 score: -2.2 bits; conditional E-value: 0.11
ABC_transp_aux 126 aiplatgngggetqiqyppwlflplsnlnsdhpitagl 163
++++ ++ g+++q +pw + n + + p+ +++
VIMSS3555401 121 PVNITVDDKGKQSQAMVFPWAIAVYNNKEVNIPLLKNI 158
34444444555555556666666666666666666665 PP
== domain 2 score: 324.0 bits; conditional E-value: 4.3e-101
ABC_transp_aux 1 kpkvgvltghgelsdspewsfleelseqydveevdldsveeip.......eeldvLviakPkedlseeelyaldqflmnGGkllvfvdpvaveld 88
++kv++++g+gels+ + +l++++e+y + +++ldsv+++p +++d+ +i kP+e +s+ee+++ldqf+mnGGk+l+++d+v++++d
VIMSS3555401 190 QKKVAIIKGNGELSEIHIGKLLRQIKESYYIGPFTLDSVAKDPngtldalKKYDLAIISKPTETFSDEEKQVLDQFIMNGGKTLWLIDQVDADMD 284
59********************************************************************************************* PP
ABC_transp_aux 89 slseagp...alprdsnLedlLekyGvrinpdlvldsnnaaiplatgngggetqiqyppwlflplsnlnsdhpitagldalllafassidtlkna 180
sl++ + a+prd+nL+d+++kyG+rinpdlv+d+n +i+latg++g++tq+q + w f+p++++ s+hpi+++l ++++ fas+idtlkn+
VIMSS3555401 285 SLYNDAGatlAYPRDLNLNDMFFKYGFRINPDLVKDENGSPIKLATGEQGSATQYQDFIWKFAPQVYPTSQHPIVKNLGGIKFDFASPIDTLKNG 379
*******************************************************************************************9666 PP
ABC_transp_aux 181 gvkktpLlsssdqsglvsaptsisls..dpepdpkdf.eggskplavllegkftsafanrp.k..elk....ssakeskiivvgDgdvlsnqv.. 263
+kkt+Ll+ss++s+++ +p +i+l+ ++e+ pkd+ ++g+ +l vlleg+f+s+f+nr + e + ++ k++k+ivv+Dgd+ +nq+
VIMSS3555401 380 -IKKTVLLQSSQYSKQIGTPSEINLNmvTEETSPKDYlNKGNLVLSVLLEGSFNSVFENRVlPfkE-SsfqaKG-KPTKMIVVADGDIARNQLdk 471
.************************************6699********************77973.2366555.******************** PP
ABC_transp_aux 264 .gkplplgfdkytkqqygnkdfllna 288
+p++lg+d++t + y+nkdf++n+
VIMSS3555401 472 nMMPVELGYDQRTGNLYDNKDFMMNC 497
*************************8 PP
Or compare VIMSS3555401 to CDD or PaperBLAST