VIMSS3555401 has 561 amino acids
Query: ABC_transp_aux [M=266]
Accession: PF09822.13
Description: ABC-type uncharacterized transport system
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.5e-91 292.6 4.9 1.5e-91 292.6 4.9 1.5 2 VIMSS3555401
Domain annotation for each sequence (and alignments):
>> VIMSS3555401
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 292.6 4.9 1.5e-91 1.5e-91 1 266 [] 32 319 .. 32 319 .. 0.96
2 ? -2.8 0.0 0.19 0.19 94 154 .. 330 388 .. 324 415 .. 0.60
Alignments for each domain:
== domain 1 score: 292.6 bits; conditional E-value: 1.5e-91
ABC_transp_aux 1 RlDlTedkrytLseatkellksleepvtitvylsgdllpaelkrlqkevrelLeeyaaysngkikvefidpeeeseeeeeaeall......giqp 89
R+DlT+dkrytLse++ +++k++++p++i++y++g+ lpa+++rlq+e+++lLee++ay+n +i +ef++p e+++ e+++ + g++p
VIMSS3555401 32 RFDLTKDKRYTLSETSLKIVKQVKNPLSIKIYMQGE-LPADFRRLQQETKQLLEEFQAYNN-NIVFEFVNPMENEN-ESMEM--VkslyqkGLTP 121
9***********************************.8*********************77.**********9993.33332..224689***** PP
ABC_transp_aux 90 teieveengkssqervypgavisygdkeevipllkn...........nseenlEyeltsaikkltkkekpkigvltghgelsdsseladlleels 173
++i+v ++gk+sq +v+p+a++ y++ke+ ipllkn s+++lEy +++ai+k+tk+ ++k+++++g+gels+ ++ +ll++++
VIMSS3555401 122 VNITVDDKGKQSQAMVFPWAIAVYNNKEVNIPLLKNimgasttqkviGSIQHLEYSIADAINKITKDRQKKVAIIKGNGELSEI-HIGKLLRQIK 215
**********999**********************************************************************9.9********* PP
ABC_transp_aux 174 enyeveevdldseae........lpeevdvlviakptkalseeekyaldqflmnGgkllvlldpvaveldslk....ealaaprdsnledlLeky 256
e+y + +++lds+a+ l +++d+ +i kpt+++s+eek++ldqf+mnGgk+l+l+d+v++++dsl+ +la+prd+nl+d+++ky
VIMSS3555401 216 ESYYIGPFTLDSVAKdpngtldaL-KKYDLAIISKPTETFSDEEKQVLDQFIMNGGKTLWLIDQVDADMDSLYndagATLAYPRDLNLNDMFFKY 309
********************9988.***********************************************999999***************** PP
ABC_transp_aux 257 GvrinpdlVl 266
G+rinpdlV+
VIMSS3555401 310 GFRINPDLVK 319
********96 PP
== domain 2 score: -2.8 bits; conditional E-value: 0.19
ABC_transp_aux 94 veengkssqervypgavisygdkeevipllknnseenlEyeltsaikkltkkekpkigvlt 154
+ e+g+ +q + + + + + ++ p++kn + ++++s i +l + k+++ + +
VIMSS3555401 330 TGEQGSATQYQDFIWKFAPQVYPTSQHPIVKNLGG--IKFDFASPIDTLKNGIKKTVLLQS 388
55555533444445555555555555555666333..667888888888888888876554 PP
Or compare VIMSS3555401 to CDD or PaperBLAST