VIMSS35622 has 302 amino acids
Query: UPF0016 [M=75]
Accession: PF01169.23
Description: Uncharacterized protein family UPF0016
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.6e-44 134.3 25.5 5.8e-26 77.0 4.7 3.0 3 VIMSS35622
Domain annotation for each sequence (and alignments):
>> VIMSS35622
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 65.9 6.9 1.8e-22 1.8e-22 3 75 .] 8 80 .. 6 80 .. 0.98
2 ! 77.0 4.7 5.8e-26 5.8e-26 2 75 .] 107 180 .. 106 180 .. 0.97
3 ? 1.5 0.3 0.022 0.022 25 47 .. 191 209 .. 187 224 .. 0.53
Alignments for each domain:
== domain 1 score: 65.9 bits; conditional E-value: 1.8e-22
UPF0016 3 sflliflaElGDkTqlatiaLAarykplaVflGatlAlalatllavllGsllakrlperlvklvaavlFlvfG 75
s++++flaElGD++ql+t++ ry+++ V++G+++A ++++++av++G++l++ +p+r v+a++Fl+f+
VIMSS35622 8 SLGAVFLAELGDRSQLITMTYTLRYRWWVVLTGVAIAAFTVHGVAVAIGHFLGSTVPARPAACVSAIAFLIFA 80
7899********************************************************************7 PP
== domain 2 score: 77.0 bits; conditional E-value: 5.8e-26
UPF0016 2 tsflliflaElGDkTqlatiaLAarykplaVflGatlAlalatllavllGsllakrlperlvklvaavlFlvfG 75
t+++ ++laElGDkT lat++LA+ +++ +V++G+tl+++la++la+ +G ll +rlperl+++++++lFl+fG
VIMSS35622 107 TVVSSFALAELGDKTTLATVTLASDHHWAGVWIGTTLGMILADGLAIGAGLLLHRRLPERLLQVLTGLLFLLFG 180
678899*******************************************************************9 PP
== domain 3 score: 1.5 bits; conditional E-value: 0.022
UPF0016 25 arykplaVflGatlAlalatlla 47
r+ ++aV+++++lA a
VIMSS35622 191 FRSVAIAVTAAVVLAAA----TT 209
44433444444444433....32 PP
Or compare VIMSS35622 to CDD or PaperBLAST