PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS358843 to PF07314 (DUF1461)

VIMSS358843 has 218 amino acids

Query:       DUF1461  [M=176]
Accession:   PF07314.15
Description: Protein of unknown function (DUF1461)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-53  166.3   9.9    3.7e-53  166.3   9.9    1.5  2  VIMSS358843  


Domain annotation for each sequence (and alignments):
>> VIMSS358843  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.3   9.9   3.7e-53   3.7e-53       2     176 .]       8     180 ..       7     180 .. 0.93
   2 ?   -2.0   0.0      0.17      0.17      12      33 ..     188     209 ..     182     216 .. 0.41

  Alignments for each domain:
  == domain 1  score: 166.3 bits;  conditional E-value: 3.7e-53
      DUF1461   2 llslllilvilllsielvinfkplyeleieklkleekvgmskeelkenykelidYlkgklkekLklpaffssekelaHfedVkkLfllalivrlvsli 99 
                  ++s ++++ i++l++ +v++ k+ly++ei+ l++++  +m+k+e+k+ny+ li Yl+ +++  L+lp++ +s+++++Hf+dVk+++ ++++v++++++
  VIMSS358843   8 VVSYSIAFSIFALATMAVVYGKWLYYFEIDFLNIPDLADMTKDEIKRNYDVLITYLSPFYDGALHLPTLDMSTNGRIHFVDVKNILVKIQYVMYATIM 105
                  5788999******************************************************************************************* PP

      DUF1461 100 lllllliklkkkkkklkllkllalilllllllillllaaidFdkfFtlfHkifFnndlWlfdpatdpiInilPeeFF 176
                  ++++  i+l kk k+ k+l   ++++++++++++l  +ai+F+k F+lfHk++F+nd+W+fdp++dpiI +lPeeFF
  VIMSS358843 106 IAVIGGIYLLKK-KNEKFLLHGSILTIIFPIALMLP-IAINFEKSFVLFHKLLFSNDYWVFDPEKDPIILMLPEEFF 180
                  **7777776666.56667777788888889888888.8**************************************9 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.17
      DUF1461  12 lllsielvinfkplyeleiekl 33 
                  ll+++   i+  +ly++ ++k 
  VIMSS358843 188 LLFILGGSILCYSLYRYLVKKK 209
                  3333333333333444433333 PP



Or compare VIMSS358843 to CDD or PaperBLAST