VIMSS359205 has 374 amino acids
Query: SU10_MCP [M=292]
Accession: PF17236.8
Description: SU10 major capsid protein
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.6e-69 220.0 1.7 3.1e-69 219.7 1.7 1.0 1 VIMSS359205
Domain annotation for each sequence (and alignments):
>> VIMSS359205
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 219.7 1.7 3.1e-69 3.1e-69 3 291 .. 5 369 .. 3 370 .. 0.95
Alignments for each domain:
== domain 1 score: 219.7 bits; conditional E-value: 3.1e-69
SU10_MCP 3 tgtgttfntedlsdeisnispedtPllsligkgtkatstkheWqedelaapaad............................................ 56
t+++++ + ++++ + +i ++ l+ lig g + t+tk+eWq+d l++ +
VIMSS359205 5 TTYEFQQQVRQMQANVDLILTKAPVLFGLIGVGDALTQTKFEWQNDYLNSDTGIvktaaavgdtdlvlekgearkftenalvqnglevlrvvsvdena 102
444445555999999999999999999*****99****************44446******************************************* PP
SU10_MCP 57 ...........................naavEga.daptaeatprvrlsNytQIfkktvevSgtaqavkkagvgdelayqvakklkelkrdiEkalin 126
++++Eg+ ++++e ++r ++N+ QIf ++++vS+t+q+v+++gv++el+yqv+ +l+e+ r+ + +li+
VIMSS359205 103 dkitvqrgydstkaeaitaggelkviaRPRPEGEdAFRKNEINDRLVSHNFSQIFSRYASVSRTQQQVNTYGVSNELDYQVNLRLQEMIREANTSLIY 200
*********************************8799************************************************************* PP
SU10_MCP 127 gtkadgssatarktgGllafittnvstaatdgtagaltedllndllqkvyeaGgnpktllvgakqkraiskfagdaertrnvgktlgvsvdvyetdf. 223
g+++ gs +++r+tgGl+af+ + + ++d +++++ ++ lnd++++v+++Gg+++t+l+g++++r+i+k+ gd+ rt+++++ g ++ ++++d
VIMSS359205 201 GRRNGGSPTQPRTTGGLFAFTGIEG-SHKQDFKGNEIAAKPLNDAVEQVFTRGGSANTILCGPNIARQITKLGGDTIRTTRQDTAAGYQILSFVSDLp 297
****7777*************7777.8899999***************************************************************** PP
SU10_MCP 224 .G.tlnvvlnrvmpadtilvldpeylklaflrpffaeplaktG.daekgqivgEytLevrn.ekahgvitgl 291
G +vv++ +mp+d++l+ld++++k ++l p+++++ + +G d+ +++i gE++ ev+n ++ ++v++++
VIMSS359205 298 gGaISSVVVDLNMPKDRALLLDTDKVKARYLTPIYDQDATPNGaDYFSRVIRGEFGFEVKNaKESIAVLENI 369
888999*******************************************************88888998887 PP
Or compare VIMSS359205 to CDD or PaperBLAST