PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS361986 to PF04235 (DUF418)

VIMSS361986 has 340 amino acids

Query:       DUF418  [M=163]
Accession:   PF04235.18
Description: Protein of unknown function (DUF418)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-34  103.6  12.7    5.4e-34  103.6  12.7    2.5  1  VIMSS361986  


Domain annotation for each sequence (and alignments):
>> VIMSS361986  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6  12.7   5.4e-34   5.4e-34       3     162 ..     166     333 ..     164     334 .. 0.79

  Alignments for each domain:
  == domain 1  score: 103.6 bits;  conditional E-value: 5.4e-34
       DUF418   3 rkgllkegekhkrllkrllliglavglplallla........llallgee..ssllslllevlsmlgglalalgyvalillllkkekrarllrplaav 90 
                  + +++++ +k+ +++ +   i++++++    +++        + + l +e  ++ +++ +  + +  g++++++yv  ++lll+ +  ++ll+pl+++
  VIMSS361986 166 QYRVFENLSKNIKQVAIFTGIMFVLSVIAVWYQYghvpadpfVNMILMNEdgTMDAASQFLKIGITVGPIISAFYVGALILLLQLKPVQTLLAPLKYY 263
                  566777777777777777777666665555444443233443333333330034444445555678899***************************** PP

       DUF418  91 GRmALTnYllqslvctlifygyglglfgslgraallllallifalqlllSklWlrrfrqGPlEwlwRkltyg 162
                  GRmALTnY+ q+ ++++   g   +++g l ++++l ++++i+a+q+++S +W++ f++GPlEw+wR +ty+
  VIMSS361986 264 GRMALTNYIGQTAMILI--AGSVCNFAGNLTYMQTLYVCIAIYAIQIVFSVIWMKIFKMGPLEWIWRVITYW 333
                  *************9999..89**************************************************9 PP



Or compare VIMSS361986 to CDD or PaperBLAST