PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS3655356 to PF06722 (EryCIII-like_C)

VIMSS3655356 has 392 amino acids

Query:       EryCIII-like_C  [M=145]
Accession:   PF06722.16
Description: Erythromycin biosynthesis protein CIII-like, C-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-25   75.3   0.1      5e-25   74.3   0.1    1.6  1  VIMSS3655356  


Domain annotation for each sequence (and alignments):
>> VIMSS3655356  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.1     5e-25     5e-25       4     144 ..     250     390 ..     247     391 .. 0.90

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 5e-25
  EryCIII-like_C   4 ldqvaelDaEivvaldedarpdlrelpdnvRlvdfvPlgvllptcaaivHhgGagstltalsfGvPqvvlpdeadaavrarrvaelGagivlskd 98 
                     +++++el  + vv+l    +   + +p nvRl  f P   ll  +a ++ hgG g ++ a+++G P v lp +ad++ +arrv+elG g+ l + 
    VIMSS3655356 250 VAALGELPCDGVVSLGPALETWSGPRPANVRLMSFAPQRELLGRAALFLSHGGFGGVHEAVQAGTPMVNLPLFADQPDNARRVTELGLGLHLDPA 344
                     56666666666677666666667789********************************************************************* PP

  EryCIII-like_C  99 eltsdsiakavaevvedpayraaaaklaeeiaaePsPtEvakklee 144
                      +t++ +a+a ++v+ d+ +r  aa+la++  + P    +a++l +
    VIMSS3655356 345 AATPEALAEAAGRVLTDRGFRRRAAELARQSREAPGFDVLAEDLAA 390
                     *******************************999987777777765 PP



Or compare VIMSS3655356 to CDD or PaperBLAST