PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS3705643 to PF04304 (DUF454)

VIMSS3705643 has 127 amino acids

Query:       DUF454  [M=115]
Accession:   PF04304.17
Description: Protein of unknown function (DUF454)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-41  126.0   8.0    4.3e-41  125.8   8.0    1.0  1  VIMSS3705643  


Domain annotation for each sequence (and alignments):
>> VIMSS3705643  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8   8.0   4.3e-41   4.3e-41       1     112 [.       2     113 ..       2     117 .. 0.97

  Alignments for each domain:
  == domain 1  score: 125.8 bits;  conditional E-value: 4.3e-41
        DUF454   1 rllllvlGllslalGviGivlPlLPTtpFlLlAafcfarssprlerwLlehklfgpyirdwrekraiplkaKvialllmalsllislllveslwvki 97 
                   rl+l+v+Gl+++alG++G+vlPlLPTtpFlL+A+fcfarss+r+++wL+++k++++y++++  +r+ +l++K+ +l+++++++++s+++v++l+v++
  VIMSS3705643   2 RLILIVIGLIFTALGIAGAVLPLLPTTPFLLVAVFCFARSSDRFYNWLINQKIYKEYVENFYLHRGYTLQQKIKILISLYIVIGFSIYMVDVLAVRV 98 
                   789********************************************************************************************** PP

        DUF454  98 llalvlllvllyllr 112
                    l++++++ +++l++
  VIMSS3705643  99 GLIIMVIIQTAVLFT 113
                   *********999965 PP



Or compare VIMSS3705643 to CDD or PaperBLAST