VIMSS394203 has 554 amino acids
Query: RACo_C_ter [M=261]
Accession: PF14574.10
Description: C-terminal domain of RACo the ASKHA domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.7e-41 127.4 0.0 4.5e-41 126.7 0.0 1.3 1 VIMSS394203
Domain annotation for each sequence (and alignments):
>> VIMSS394203
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 126.7 0.0 4.5e-41 4.5e-41 4 249 .. 280 553 .. 278 554 .] 0.88
Alignments for each domain:
== domain 1 score: 126.7 bits; conditional E-value: 4.5e-41
RACo_C_ter 4 lliDiGTNaEivlgnk.dwllaasaaaGPAlEGgeikcGmrAapgAierveidpetlevelkvignek.......................pkGicGs 77
+l D+GTN+E vl + +++s a GPAlEG ++++G A pgA ++ +p l + + ++ + +++i G+
VIMSS394203 280 VLADLGTNGEFVLALSpAHSIVTSVAMGPALEGIGMTHGSMACPGAATAFSATPLGLVPAVLDAQGIPvvsppaslrpadikaggmaaaqsIRSISGT 377
678*********98652678999*********************************98888877776678889999999999999999999******* PP
RACo_C_ter 78 Giidliaelleagiidkkgklnkelkserireeeeteeyvlvlaeeset.......ekdivitekDidelirakaAiyagvktLleevglevedidkv 168
G ++li+ ll++g i+ +g++n++ + ++ + v++++ ++ t +++++++ +Di+e+++ kaA +++ Ll e+ l+ d+++v
VIMSS394203 378 GYLSLITVLLQTGAITPDGQFNTQP---SSVAGRRLARAVVHDSPQAPTqgaclrlNASVTLSARDIEEILKVKAAFSLAFERLLCEASLSPADVRRV 472
*********************8874...3444444444555444333221111222569*************************************** PP
RACo_C_ter 169 ylaGafGsyidlekAitiGllPdlelekvkqvGNtslagAraallsreareeleeiarkityielavekkFmeefvaalfl 249
+laGa G+++ +++ t+G lP+ ++ ++++GNt+l+gA +l+ ++ r+++ + + +l ++++F+++f++ + +
VIMSS394203 473 FLAGALGQHVSPADLETLGFLPRGLAQCTTAAGNTALRGAMHMLTRHHCRTRAAQWSAGAIVADLTSDPAFTTNFMRHMRF 553
***********************99***************************************************98865 PP
Or compare VIMSS394203 to CDD or PaperBLAST