VIMSS4040419 has 175 amino acids
Query: DUF308 [M=73]
Accession: PF03729.18
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.7e-37 113.2 63.8 1.8e-22 65.7 12.2 3.0 3 VIMSS4040419
Domain annotation for each sequence (and alignments):
>> VIMSS4040419
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 65.7 12.2 1.8e-22 1.8e-22 1 73 [] 11 82 .. 11 82 .. 0.96
2 ! 46.1 18.7 2.3e-16 2.3e-16 3 73 .] 70 140 .. 68 140 .. 0.93
3 ! 26.6 16.9 3e-10 3e-10 2 46 .. 127 171 .. 126 175 .] 0.91
Alignments for each domain:
== domain 1 score: 65.7 bits; conditional E-value: 1.8e-22
DUF308 1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilsiiaGllllf 73
l Gi++iilG+++l++Pg++ll++++++G+lll+sGi++ +++f+ rk+++ ++w l+ Gilsi++G+lllf
VIMSS4040419 11 LAGIAMIILGVWFLFHPGISLLTSTLMFGFLLLISGIFHTISYFSDRKSQNISGW-VLADGILSILLGFLLLF 82
57*************************************************9998.788************97 PP
== domain 2 score: 46.1 bits; conditional E-value: 2.3e-16
DUF308 3 GilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilsiiaGllllf 73
Gil+i+lG+l+l++ + +l+lv+l+G+++l++Gi++ ++af+a++++ +g + l +Gi+ ii+G+++lf
VIMSS4040419 70 GILSILLGFLLLFNEFDGTLTLVLLFGMWVLFAGIMRTIGAFTAKQNNVQGWGWILTIGIIGIIVGFIALF 140
9*****************************************88887776655***************997 PP
== domain 3 score: 26.6 bits; conditional E-value: 3e-10
DUF308 2 lGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaa 46
+Gi+ ii+G++al++P+++++ +v++++++++v Gi +++ f+
VIMSS4040419 127 IGIIGIIVGFIALFNPVVSAIGIVLVVAIFFIVQGIGAIATFFFI 171
7**************************************877754 PP
Or compare VIMSS4040419 to CDD or PaperBLAST