VIMSS4205947 has 947 amino acids
Query: DUF4988 [M=182]
Accession: PF16378.9
Description: Domain of unknown function
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.4e-19 54.0 2.5 8.4e-19 54.0 2.5 2.0 2 VIMSS4205947
Domain annotation for each sequence (and alignments):
>> VIMSS4205947
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 54.0 2.5 8.4e-19 8.4e-19 18 177 .. 56 213 .. 52 219 .. 0.80
2 ? -2.9 0.0 0.24 0.24 2 48 .. 858 904 .. 857 923 .. 0.71
Alignments for each domain:
== domain 1 score: 54.0 bits; conditional E-value: 8.4e-19
DUF4988 18 qvkelndnitalkalv...eegkviteveeaadg.syvltlsdgk.......titlkqgkdgekaaPvigvrdeeGlyyWtvttdGettelkdaegk 103
v+++n+n++al++l+ +++ +++ ++ ++g sy+++lsdg +l+ g + ++ P +g + e yyWt+ ++++l+ ++++
VIMSS4205947 56 AVENINTNVKALRKLIeakQQDLAVKTYNPVNNGaSYTIELSDGTsfsmyaqIAALEGGGEDVVYSPKVGAKVEHDEYYWTL----DDVWLTFENDE 148
6899***********977777789999999888889********9565555223455666668999******77777*****....99********* PP
DUF4988 104 kikav.gkdgitPvlsvdeegyWtvsydeGksverildedGkpvkAvdkdsaedsffksvvad.eeslvltLknge 177
k+k+ +++++P+++++ +gyWtv G++ ++ d kAv+++ s fk+v + +es+++t ++ +
VIMSS4205947 149 KVKVLdENNTVAPIVDINTDGYWTV--KYGTKSRTL-D------KAVSGKL--TSQFKQVSTIgDESVSFTFTDRT 213
****9556799**************..556665555.3......5666665..67788888777888888887765 PP
== domain 2 score: -2.9 bits; conditional E-value: 0.24
DUF4988 2 edrvdslkervealesqvkelndnitalkalveegkviteveeaadg 48
+d v +l++ v +++ ++ + ++++++ +++ kv t ++d+
VIMSS4205947 858 RDAVTALEDGVYTIRIRYRAPSATVNTVDMYINNTKVGTPEFAQTDN 904
67888888888888888888888888887777777665554444554 PP
Or compare VIMSS4205947 to CDD or PaperBLAST