PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS44752 to PF04402 (SIMPL)

VIMSS44752 has 238 amino acids

Query:       SIMPL  [M=205]
Accession:   PF04402.19
Description: Protein of unknown function (DUF541)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-14   40.4   0.0    2.3e-14   40.2   0.0    1.0  1  VIMSS44752  


Domain annotation for each sequence (and alignments):
>> VIMSS44752  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   2.3e-14   2.3e-14       1     160 [.      45     204 ..      45     225 .. 0.90

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 2.3e-14
       SIMPL   1 itVtGeaevevapDlatvslgvetegkdaaeaqaevaervnavlaaLkaaagieekdiqtsglsvspeydyengkrkitgyrasnsltvtvrdldk... 96 
                 itV+G +e+e+ +   ++ l ++ +g + ++  ++++  ++++ +++  ++g +e+ i+ + +  + e+    +k  +  yra  sltv +++++k   
  VIMSS44752  45 ITVKGLSEREILSTSSSWGLRYSLTGNTINDINKANNLSLSKIKSFFL-KHGFSEDHIKMGFMEFNEET----YKESLYKYRAYISLTVHTKNIEKmea 138
                 8*********************************************99.67***********9884444....4788888****************888 PP

       SIMPL  97 lgelldaaveagan..ridgvsfslsdedelrkearaeAvkdArakAealAkalglklgrvvsise 160
                 +++ ++++ ++g    + +g+++  ++ ++ + e++a+ +++A+  A ++Ak + +klg++++ + 
  VIMSS44752 139 AEKNIAELYNQGILisNSGGPRYYFDNINDIKPEMLADSIRNAKLAALEFAKHSSSKLGKIKNANQ 204
                 88899999999988755889999999999********************************98877 PP



Or compare VIMSS44752 to CDD or PaperBLAST