VIMSS45872 has 971 amino acids
Query: DUF262 [M=199]
Accession: PF03235.18
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7e-35 107.1 16.4 7e-35 107.1 16.4 7.2 4 VIMSS45872
Domain annotation for each sequence (and alignments):
>> VIMSS45872
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -26.9 35.2 1 1 77 77 .. 156 156 .. 9 300 .. 0.56
2 ! 107.1 16.4 7e-35 7e-35 3 198 .. 309 526 .. 307 527 .. 0.81
3 ? -29.6 36.4 1 1 185 185 .. 697 697 .. 529 857 .. 0.57
4 ? -6.9 11.8 1 1 144 183 .. 882 914 .. 797 959 .. 0.46
Alignments for each domain:
== domain 1 score: -26.9 bits; conditional E-value: 1
DUF262 77 a 77
VIMSS45872 156 H 156
2 PP
== domain 2 score: 107.1 bits; conditional E-value: 7e-35
DUF262 3 dllskkksg.fliPdyQRgyvWdeeqvedLiedike......lrgyplGsivlwkeaededgkyeviDGQQRltTltlllka.lee.dekekeeeeklk 92
++l+k++ + iP +QR+yvW+ +++e+L+edi++ +++++lGsi+ + +e++ ++ ++iDGQQRltTl+l+ ka + ++++ee +k++
VIMSS45872 309 KFLNKNETIkMSIPVFQRNYVWTIDNIEKLLEDINDisnkqnNENHFLGSIISVLVKEESIDNIQIIDGQQRLTTLFLITKAfI-IfLYNNREEITKFT 406
56666666568***********************99*****************9888888**********************41.23355567777777 PP
DUF262 93 lekreedkdffekllenekeelek.leklkelngkkfkdlseeekseseknlikayelikek................ai.eklklveielddeddede 173
+e+ ++ + + +++ e++ + + + +++ ++ ls++e +++++++ +++ i e+ a+ ++l l + l++ d
VIMSS45872 407 NEQIKQLSHLKDIFFNREFIIDRFsRIGGNPDYEALKQILSNDELDNKNNHIFMNLKDIVEWfeekpkefkewanfanALfNNLILNLVILKN-VD--- 501
777777777777777777777777555566666666666688888999999999999999999999***999998876444555555555554.45... PP
DUF262 174 afeiFerlNsrGvpLsaadllkall 198
f+ Fe+lN++ ++L+a +llk+++
VIMSS45872 502 EFKTFESLNTNAKKLNAIELLKNKF 526
6**********************98 PP
== domain 3 score: -29.6 bits; conditional E-value: 1
DUF262 185 G 185
+
VIMSS45872 697 K 697
0 PP
== domain 4 score: -6.9 bits; conditional E-value: 1
DUF262 144 ikayelikekaieklklveielddeddedeafeiFerlNs 183
+k+ +i++ l ++ +e++ + ++ F ++N+
VIMSS45872 882 YKNAPIIQN-------LWLYKGLNEEQITKLYNEFTKINE 914
112222221.......111111112222222222222222 PP
Or compare VIMSS45872 to CDD or PaperBLAST