VIMSS45872 has 971 amino acids
Query: GmrSD_N [M=199]
Accession: PF03235.19
Description: GmrSD restriction endonuclease, N-terminal domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.8e-35 106.9 16.3 7.8e-35 106.9 16.3 7.2 5 VIMSS45872
Domain annotation for each sequence (and alignments):
>> VIMSS45872
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -9.5 15.5 1 1 85 178 .. 30 151 .. 10 172 .. 0.36
2 ? -7.3 14.6 1 1 85 154 .. 180 260 .. 147 296 .. 0.38
3 ! 106.9 16.3 7.8e-35 7.8e-35 4 198 .. 310 526 .. 307 527 .. 0.78
4 ? -30.0 36.8 1 1 182 182 .. 694 694 .. 528 857 .. 0.57
5 ? -6.7 11.5 1 1 106 183 .. 891 914 .. 797 965 .. 0.49
Alignments for each domain:
== domain 1 score: -9.5 bits; conditional E-value: 1
GmrSD_N 85 keeeeklklekreedkdffekllenekeeles.leklkelngkkfkdl.....seeekseseknlikayelikek...................ai... 155
+ekl l+++++ ++ + + +++k e++ + + + +++ ++ +++ +++++ +k y + + ++
VIMSS45872 30 IFSNEKLHLDTNDQEWKILINDKNQKKVEFSFkRSSYELIRVLYYLQIivdsdKNKTINTYKNDTLKDYIFTFNVsdnteksinkhitnvfvnkFLrnl 128
333333333333333333333333333333332222222222222222222221111111111111111111111222233333323322332211222 PP
GmrSD_N 156 eklklveieldseddedeafeiF 178
+ ++ + e+ +++++d + +iF
VIMSS45872 129 DLNDFFQNETIDQKNKDFVLTIF 151
33344444444555555555555 PP
== domain 2 score: -7.3 bits; conditional E-value: 1
GmrSD_N 85 keeeeklklekreedkdffekllenekeelesleklkelngkkfkdl.......seeekseseknlikayelikek.........a 154
+++ + + ++ k+f+e++++++ ++e +k ++++ k++++ ++ +k+++++ ++++ ++ +ek +
VIMSS45872 180 DSNFK-----HFKQYKEFVENYFKDQIISNELITKFENYWAKTNDENkanpnnqTNINKTKNKPDFLRTAKTQQEKdnkkfnfeeY 260
12222.....2222222222222222222222222222222222222222222244444444444444444444434443333330 PP
== domain 3 score: 106.9 bits; conditional E-value: 7.8e-35
GmrSD_N 4 llskeksg.fliPdyQRgyvWdeeqvedLiedike......lrgyplGsivlwkeaededgkyeviDGQQRltTltlllka.lee.dekekeeeeklkl 93
+l+k++ + iP +QR+yvW+ +++e+L+edi++ +++++lGsi+ + +e++ ++ ++iDGQQRltTl+l+ ka + ++++ee +k+++
VIMSS45872 310 FLNKNETIkMSIPVFQRNYVWTIDNIEKLLEDINDisnkqnNENHFLGSIISVLVKEESIDNIQIIDGQQRLTTLFLITKAfI-IfLYNNREEITKFTN 407
5666665458***********************99*****************9878888**********************41.233455566667777 PP
GmrSD_N 94 ekreedkdffekllenekeeles.leklkelngkkfkdlseeekseseknlikayelikek................ai.eklklveieldseddedea 174
e+ ++ + + +++ e + + + +++ ++ ls++e +++++++ +++ i e+ a+ ++l l + l++ d
VIMSS45872 408 EQIKQLSHLKDIFFNREFIIDRFsRIGGNPDYEALKQILSNDELDNKNNHIFMNLKDIVEWfeekpkefkewanfanALfNNLILNLVILKN-VD---E 502
77777777777777777776666555555555666666688888888888888888888888888999999998876444555555555554.45...6 PP
GmrSD_N 175 feiFerlNsrGvpLsaadllkall 198
f+ Fe+lN++ ++L+a +llk+++
VIMSS45872 503 FKTFESLNTNAKKLNAIELLKNKF 526
**********************98 PP
== domain 4 score: -30.0 bits; conditional E-value: 1
GmrSD_N 182 N 182
N
VIMSS45872 694 N 694
0 PP
== domain 5 score: -6.7 bits; conditional E-value: 1
GmrSD_N 106 llenekeelesleklkelngkkfkdlseeekseseknlikayelikekaieklklveieldseddedeafeiFerlNs 183
l+ ++ +e++ + ++ F ++N+
VIMSS45872 891 LWLYKGL------------------------------------------------------NEEQITKLYNEFTKINE 914
1111111......................................................11222222222222222 PP
Or compare VIMSS45872 to CDD or PaperBLAST