VIMSS45872 has 971 amino acids
Query: GmrSD_C [M=138]
Accession: PF07510.16
Description: GmrSD restriction endonucleases, C-terminal domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.6e-17 48.4 16.6 4.6e-17 48.4 16.6 5.9 5 VIMSS45872
Domain annotation for each sequence (and alignments):
>> VIMSS45872
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -9.7 11.9 1 1 12 106 .. 57 146 .. 47 205 .. 0.58
2 ? -13.6 14.2 1 1 67 67 .. 197 197 .. 126 270 .. 0.50
3 ? -4.8 5.9 1 1 73 130 .. 484 539 .. 442 561 .. 0.70
4 ? -2.4 0.5 0.23 0.23 13 29 .. 614 630 .. 588 648 .. 0.60
5 ! 48.4 16.6 4.6e-17 4.6e-17 5 137 .. 773 911 .. 769 958 .. 0.86
Alignments for each domain:
== domain 1 score: -9.7 bits; conditional E-value: 1
GmrSD_C 12 tdkkfykksskklryillgrleedlyeedeikgsskketiEHilPqslaekwgageddeeereelvndlgNLtlltgslNsaisnkdfleKreky 106
+++f+++s + +r++++ ++ d+++++ i++ ++ + + i+ + ++++ ++ ++ + +vn+ l + +lN+ +n ++K++++
VIMSS45872 57 VEFSFKRSSYELIRVLYYLQIIVDSDKNKTINTYKNDTLKDYIFTFNVSDNT-EKSINKHITNVFVNK----FLRNLDLNDFFQNETIDQKNKDF 146
4555666665566666666666667766666666455557888888888876.333444444444444....44444444444444444444433 PP
== domain 2 score: -13.6 bits; conditional E-value: 1
GmrSD_C 67 e 67
+
VIMSS45872 197 F 197
2 PP
== domain 3 score: -4.8 bits; conditional E-value: 1
GmrSD_C 73 reelvndlgNLtlltgslN.saisnkdfleKrekyeksclyltrkladkdkwneeviea 130
+ n ++NL++l+ N ++ + + l +++k + + l+ k++++++++e +++
VIMSS45872 484 NALFNNLILNLVILK---NvDEFKTFESLNTNAKKLNAIELLKNKFCWYENFKESIFKN 539
333445568999988...76666655555555555557777777888888777766655 PP
== domain 4 score: -2.4 bits; conditional E-value: 0.23
GmrSD_C 13 dkkfykksskklryill 29
+++ +++++ +l+y+ +
VIMSS45872 614 KFTLKNNWKACLKYFSK 630
33444444445555554 PP
== domain 5 score: 48.4 bits; conditional E-value: 4.6e-17
GmrSD_C 5 defkrdltdkkfykksskklryillgrleedlyeedeikgsskket..................iEHilPqslaekwgageddeeereelvndlgNLtl 85
+++k+ +++ +k s+ +l+y+++ +++ + + +d + ++ +k t iEH++ qsl+++ +++++n++gNL+
VIMSS45872 773 KNIKNFYNKMLDEKVSDIHLAYLIRFETYLTFFLDDTQINK-NKDTkvffyppsnadnekadltIEHMYSQSLKDER---------FNIVKNNIGNLIP 861
55666666666677776689999998888777766555555.3333467999999999999999***********77.........************* PP
GmrSD_C 86 ltgslNsaisnkdfleKrekyeksclyltrkladkdkwneeviearqeaLak 137
lt+++Nsa++nk+f++K++ y++ + ++ +l ++ nee+i++ ++++k
VIMSS45872 862 LTKEYNSALNNKEFKDKKQRYKNAPIIQNLWL--YKGLNEEQITKLYNEFTK 911
*****************************999..599999999998888876 PP
Or compare VIMSS45872 to CDD or PaperBLAST