VIMSS500031 has 335 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.1e-27 82.2 0.0 2.4e-26 78.7 0.0 2.1 1 VIMSS500031
Domain annotation for each sequence (and alignments):
>> VIMSS500031
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 78.7 0.0 2.4e-26 2.4e-26 7 176 .. 163 308 .. 157 326 .. 0.87
Alignments for each domain:
== domain 1 score: 78.7 bits; conditional E-value: 2.4e-26
UPF0020 7 ngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdl 104
+ ++L + LA al+rla++++g + lDP+ GsGti++Eaa p +y+ Dld++ + are a + g++
VIMSS500031 163 ALRGSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSP-----------------------VYAGDLDEKRLGLAREAALASGLS-W 236
557899**********************************965554443.......................9**************999888876.6 PP
UPF0020 105 iefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekal 176
i f ada++L++ evd i++npP G rlg+k+ l +LY flr + l ggr +llt l++al
VIMSS500031 237 IRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALLKRAL 308
788888******8888**************************************999999987777666665 PP
Or compare VIMSS500031 to CDD or PaperBLAST