PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS53093 to PF04402 (SIMPL)

VIMSS53093 has 238 amino acids

Query:       SIMPL  [M=205]
Accession:   PF04402.18
Description: Protein of unknown function (DUF541)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-50  156.5   7.7    6.5e-50  156.3   7.7    1.0  1  VIMSS53093  


Domain annotation for each sequence (and alignments):
>> VIMSS53093  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.3   7.7   6.5e-50   6.5e-50       1     205 []      35     234 ..      35     234 .. 0.93

  Alignments for each domain:
  == domain 1  score: 156.3 bits;  conditional E-value: 6.5e-50
       SIMPL   1 itVtGeaevevapDlatvtlgvetegkdaaeaqaevaervnavlaalkaaagieekdiqtsglsvspeydy.kngkrkitgyrasqsltvtvrdldklg 98 
                 i+++G++ev+++pD+a++++ v+++  +a++a+a+v+++v+++++ l ++ g+++++i++s+l+++p+y y  ngk++++gy+as+s+tv+v++++kl+
  VIMSS53093  35 ISTSGYGEVTAVPDMAEFSVKVVESTMNAEQAKAAVDKAVTEFTSKLVKS-GVAQQNISSSNLYINPQYHYpANGKPELVGYQASRSITVRVEEVSKLN 132
                 899*********************************************66.************************************************ PP

       SIMPL  99 elldalveaganridgvsfslsdedelreearkeAvkdArakAealAkalgvklgrvvsisesgasgapppppaamaaaaaa.aaaaaaatpiepgeit 196
                 + ld ++e+g+n++++++++++d+++++++ar +A++dA+ kA+ lAk + ++l +v++i+++      +p+ ++ +++aa  ++++++a +++     
  VIMSS53093 133 QYLDIALESGINQVNSIQLKVRDQEKYQQQARMAAIEDAKLKAQSLAKGFERRLEGVWRIDYN------TPSVEPIMMRAANlSEKMDVADTYQESSLV 225
                 **************************************************************4......22233333333335889999999999999* PP

       SIMPL 197 vsasVtvtf 205
                 ++ +V v++
  VIMSS53093 226 IRDRVDVVY 234
                 ******997 PP



Or compare VIMSS53093 to CDD or PaperBLAST