VIMSS535253 has 197 amino acids
Query: DUF308 [M=73]
Accession: PF03729.17
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.2e-30 89.6 45.4 4.3e-16 45.3 20.6 3.1 3 VIMSS535253
Domain annotation for each sequence (and alignments):
>> VIMSS535253
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.3 20.6 4.3e-16 4.3e-16 1 72 [. 28 98 .. 28 99 .. 0.93
2 ! 27.9 7.6 1.1e-10 1.1e-10 19 72 .. 105 156 .. 103 157 .. 0.90
3 ! 40.2 9.0 1.7e-14 1.7e-14 2 50 .. 144 192 .. 143 196 .. 0.94
Alignments for each domain:
== domain 1 score: 45.3 bits; conditional E-value: 4.3e-16
DUF308 1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllll 72
l+Gil+++lG+l+l+wPg+++l+ ++ +Gv+ll+ Gi+q+v af + + + g+++ll++sG+ ++i++ll++
VIMSS535253 28 LSGILSLALGVLVLVWPGISILVAAVAFGVYLLITGIAQVVFAF-SLHVSAGSRVLLFISGAASLILALLAF 98
58******************************************.555577789999************987 PP
== domain 2 score: 27.9 bits; conditional E-value: 1.1e-10
DUF308 19 aallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllll 72
a+l+l+i+iG+ +++ G++ ++a++ + g+g + +++G+++++aG+++l
VIMSS535253 105 YAILLLAIWIGIGFIFRGVATTISAVSDPNLPGRG--WNIFLGVISLLAGIVVL 156
68999*********************777777665..8**************98 PP
== domain 3 score: 40.2 bits; conditional E-value: 1.7e-14
DUF308 2 lGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkke 50
lG++++++Gi++l+ P+ ++++l+i++G++++v G+++++++f rk +
VIMSS535253 144 LGVISLLAGIVVLASPFESIVTLAIVVGAWFVVIGVFEIISSFGIRKAS 192
8******************************************998865 PP
Or compare VIMSS535253 to CDD or PaperBLAST