VIMSS54085 has 708 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.4e-68 216.6 0.0 1.5e-63 200.1 0.0 2.3 2 VIMSS54085
Domain annotation for each sequence (and alignments):
>> VIMSS54085
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 200.1 0.0 1.5e-63 1.5e-63 1 196 [. 162 374 .. 162 375 .. 0.95
2 ! 14.2 0.0 1.4e-06 1.4e-06 79 168 .. 569 661 .. 540 685 .. 0.82
Alignments for each domain:
== domain 1 score: 200.1 bits; conditional E-value: 1.5e-63
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye.............lkaeaeeear.....aelklyg 81
RgyR +g+apL+etLAaa++ ++gw++ +pllDPmCGsGt+lIEaa+++aniapgl r+++++ +k+ea + + +e ++yg
VIMSS54085 162 RGYRTEAGKAPLRETLAAAIILRSGWDASKPLLDPMCGSGTLLIEAAMMAANIAPGLQRKKWGFealedfepelwasVKSEASVQGKrgvkkVETHFYG 260
9*************************************************************************9998888877766676555666*** PP
UPF0020 82 sDldrrvvqgareNaekagvgdliefsqadaakLrlkeg.evdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleer 179
+D+d+rv+q+a++Na++agv++li+f daak++++e+ +++++npPYGerlg+++ l +LY +f+ +lk ++ g +++++++ +l ++l++r
VIMSS54085 261 VDNDNRVLQTAKDNARRAGVEELISFTLGDAAKVKRPENfAEGIVICNPPYGERLGTHPGLIALYTAFGAQLKAEFGG--CHASIFSSSDELLSCLRMR 357
***********************************77766889********************************999..******************* PP
UPF0020 180 alrkvkeknvklglllk 196
a +++k++n+ l +++k
VIMSS54085 358 ADKQFKLNNGALPCHQK 374
**************997 PP
== domain 2 score: 14.2 bits; conditional E-value: 1.4e-06
UPF0020 79 lygsDldrrvvqgareNae.kagvgdliefsqadaakLr.lkegevdvivtnpP...YGerlgskkalekLYseflrelkrvlrgggrlvlltae 168
+D+ + +++ a+eN + + +vg + +++qad + ++++++d+i +pP +r++++ ++++ + +++ lkr lr +g +v+ +
VIMSS54085 569 TTTVDMSKTYLEWAKENMQlNGQVGRQHQYVQADCLQWLaNAQSQYDLIFIDPPtfsNSKRMEQTFDVQRDHVTLMTNLKRLLRPEGTIVFS--N 661
6789**************9456799999999*9998754478889*********644478999**********************7766653..3 PP
Or compare VIMSS54085 to CDD or PaperBLAST